Hb_142439_010

Information

Type -
Description -
Location Contig142439: 2912-3892
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24270g
description POPTRDRAFT_801458; kelch repeat-containing F-box family protein
nr
ID XP_012092081.1
description PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
swissprot
ID Q0V7S6
description F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1
trembl
ID A0A067JBX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21807 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11279: 2437-3228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142439_010 0.0 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
2 Hb_005914_060 0.0641268687 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
3 Hb_001430_120 0.0652766385 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
4 Hb_003952_070 0.0680047417 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000189_340 0.0695285586 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
6 Hb_000008_330 0.0763493831 - - 60S ribosomal protein L12A [Hevea brasiliensis]
7 Hb_075481_030 0.0771488359 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
8 Hb_001486_340 0.0781103526 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
9 Hb_009620_040 0.0805476843 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
10 Hb_017491_030 0.0809500555 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
11 Hb_000768_110 0.0834182074 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
12 Hb_000521_260 0.083782132 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
13 Hb_005245_130 0.0854158124 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
14 Hb_000179_030 0.0868588298 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
15 Hb_004310_150 0.0871648672 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
16 Hb_006252_040 0.0872095824 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
17 Hb_008159_020 0.0873004676 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_001358_030 0.088063099 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
19 Hb_005276_210 0.0885045844 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
20 Hb_000538_100 0.0886914313 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_142439_010 Hb_142439_010 Hb_005914_060 Hb_005914_060 Hb_142439_010--Hb_005914_060 Hb_001430_120 Hb_001430_120 Hb_142439_010--Hb_001430_120 Hb_003952_070 Hb_003952_070 Hb_142439_010--Hb_003952_070 Hb_000189_340 Hb_000189_340 Hb_142439_010--Hb_000189_340 Hb_000008_330 Hb_000008_330 Hb_142439_010--Hb_000008_330 Hb_075481_030 Hb_075481_030 Hb_142439_010--Hb_075481_030 Hb_023386_040 Hb_023386_040 Hb_005914_060--Hb_023386_040 Hb_000926_190 Hb_000926_190 Hb_005914_060--Hb_000926_190 Hb_000179_030 Hb_000179_030 Hb_005914_060--Hb_000179_030 Hb_000768_110 Hb_000768_110 Hb_005914_060--Hb_000768_110 Hb_003428_070 Hb_003428_070 Hb_005914_060--Hb_003428_070 Hb_001358_030 Hb_001358_030 Hb_001430_120--Hb_001358_030 Hb_001430_120--Hb_000189_340 Hb_005260_020 Hb_005260_020 Hb_001430_120--Hb_005260_020 Hb_002296_050 Hb_002296_050 Hb_001430_120--Hb_002296_050 Hb_004310_150 Hb_004310_150 Hb_001430_120--Hb_004310_150 Hb_004881_020 Hb_004881_020 Hb_003952_070--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_003952_070--Hb_006252_040 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_000538_100 Hb_000538_100 Hb_003952_070--Hb_000538_100 Hb_005276_210 Hb_005276_210 Hb_003952_070--Hb_005276_210 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150 Hb_001766_150 Hb_001766_150 Hb_000189_340--Hb_001766_150 Hb_001047_100 Hb_001047_100 Hb_000189_340--Hb_001047_100 Hb_105386_010 Hb_105386_010 Hb_000189_340--Hb_105386_010 Hb_000189_340--Hb_001358_030 Hb_009222_010 Hb_009222_010 Hb_000189_340--Hb_009222_010 Hb_004724_320 Hb_004724_320 Hb_000008_330--Hb_004724_320 Hb_000008_330--Hb_001047_100 Hb_000861_070 Hb_000861_070 Hb_000008_330--Hb_000861_070 Hb_000008_330--Hb_075481_030 Hb_000008_330--Hb_105386_010 Hb_000521_260 Hb_000521_260 Hb_075481_030--Hb_000521_260 Hb_004162_280 Hb_004162_280 Hb_075481_030--Hb_004162_280 Hb_075481_030--Hb_005276_210 Hb_075481_030--Hb_004724_320 Hb_075481_030--Hb_000861_070 Hb_000173_510 Hb_000173_510 Hb_075481_030--Hb_000173_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.18718 5.25768 3.33905 2.78744 7.72921 10.0252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20136 5.99434 3.4453 3.67164 2.07688

CAGE analysis