Hb_142522_040

Information

Type -
Description -
Location Contig142522: 26621-39515
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142522_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000732_180 0.1086855922 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
3 Hb_116784_020 0.1108153258 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
4 Hb_000820_100 0.1209317688 - - RNA-directed DNA polymerase [Arachis hypogaea]
5 Hb_001366_260 0.1243061163 - - T4.15 [Malus x robusta]
6 Hb_007543_020 0.1298858069 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
7 Hb_000173_110 0.1332219153 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
8 Hb_009434_060 0.1336296878 - - T4.15 [Malus x robusta]
9 Hb_000527_120 0.144357197 - - hypothetical protein VITISV_027174 [Vitis vinifera]
10 Hb_000060_130 0.1524810763 - - -
11 Hb_067472_010 0.1605810069 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
12 Hb_004520_010 0.1633930923 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
13 Hb_000027_230 0.1664530635 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_005092_090 0.166938249 - - cold regulated protein [Manihot esculenta]
15 Hb_002013_030 0.1683030365 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
16 Hb_001452_090 0.1683059796 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
17 Hb_000101_320 0.1694499414 - - -
18 Hb_000352_060 0.1695335804 - - RNA-directed DNA polymerase [Arachis hypogaea]
19 Hb_000009_390 0.1706710508 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
20 Hb_001468_040 0.1708796675 - - Uncharacterized protein TCM_024268 [Theobroma cacao]

Gene co-expression network

sample Hb_142522_040 Hb_142522_040 Hb_000732_180 Hb_000732_180 Hb_142522_040--Hb_000732_180 Hb_116784_020 Hb_116784_020 Hb_142522_040--Hb_116784_020 Hb_000820_100 Hb_000820_100 Hb_142522_040--Hb_000820_100 Hb_001366_260 Hb_001366_260 Hb_142522_040--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_142522_040--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_142522_040--Hb_000173_110 Hb_001345_040 Hb_001345_040 Hb_000732_180--Hb_001345_040 Hb_000732_180--Hb_116784_020 Hb_006588_020 Hb_006588_020 Hb_000732_180--Hb_006588_020 Hb_000732_180--Hb_001366_260 Hb_002845_020 Hb_002845_020 Hb_000732_180--Hb_002845_020 Hb_067472_010 Hb_067472_010 Hb_116784_020--Hb_067472_010 Hb_116784_020--Hb_001366_260 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_116784_020--Hb_000820_100 Hb_000820_100--Hb_001366_260 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_000173_110 Hb_000123_340 Hb_000123_340 Hb_000820_100--Hb_000123_340 Hb_001366_260--Hb_067472_010 Hb_001366_260--Hb_007543_020 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_007543_020--Hb_000123_340 Hb_000173_110--Hb_000123_340 Hb_010565_030 Hb_010565_030 Hb_000173_110--Hb_010565_030 Hb_000173_110--Hb_116784_020 Hb_011472_050 Hb_011472_050 Hb_000173_110--Hb_011472_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0104888 0.459928 0.242886 0.0744565 0.0717702 0.018993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.433549 1.20094

CAGE analysis