Hb_143004_010

Information

Type -
Description -
Location Contig143004: 2002-4416
Sequence    

Annotation

kegg
ID egr:104450456
description uncharacterized J domain-containing protein C1071.09c
nr
ID XP_010063320.1
description PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
swissprot
ID B0S1F7
description Chaperone protein DnaJ OS=Finegoldia magna (strain ATCC 29328) GN=dnaJ PE=3 SV=1
trembl
ID A0A059BWQ0
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03733 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143004_010 0.0 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
2 Hb_021374_020 0.1304854786 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
3 Hb_000789_210 0.1471706708 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
4 Hb_000668_030 0.1471912405 - - -
5 Hb_001115_060 0.1472004685 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
6 Hb_004984_090 0.1472210272 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
7 Hb_002281_060 0.1472221688 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
8 Hb_010523_020 0.1472996519 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001623_450 0.1473185285 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
10 Hb_003898_010 0.1473261168 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_000199_050 0.1473287624 - - Gibberellin 20 oxidase, putative [Ricinus communis]
12 Hb_001385_020 0.1487615347 - - hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
13 Hb_000288_050 0.1488315419 - - conserved hypothetical protein [Ricinus communis]
14 Hb_133913_010 0.1488766405 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
15 Hb_000051_100 0.1502123743 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
16 Hb_005300_050 0.1506052126 - - hypothetical protein VITISV_001308 [Vitis vinifera]
17 Hb_003908_010 0.1506668937 - - polyprotein [Oryza australiensis]
18 Hb_001255_070 0.1508327623 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000917_020 0.1509776409 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_007524_040 0.1510165808 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]

Gene co-expression network

sample Hb_143004_010 Hb_143004_010 Hb_021374_020 Hb_021374_020 Hb_143004_010--Hb_021374_020 Hb_000789_210 Hb_000789_210 Hb_143004_010--Hb_000789_210 Hb_000668_030 Hb_000668_030 Hb_143004_010--Hb_000668_030 Hb_001115_060 Hb_001115_060 Hb_143004_010--Hb_001115_060 Hb_004984_090 Hb_004984_090 Hb_143004_010--Hb_004984_090 Hb_002281_060 Hb_002281_060 Hb_143004_010--Hb_002281_060 Hb_001124_170 Hb_001124_170 Hb_021374_020--Hb_001124_170 Hb_002495_050 Hb_002495_050 Hb_021374_020--Hb_002495_050 Hb_097433_030 Hb_097433_030 Hb_021374_020--Hb_097433_030 Hb_104735_010 Hb_104735_010 Hb_021374_020--Hb_104735_010 Hb_013420_020 Hb_013420_020 Hb_021374_020--Hb_013420_020 Hb_000789_210--Hb_000668_030 Hb_000789_210--Hb_001115_060 Hb_000789_210--Hb_002281_060 Hb_000789_210--Hb_004984_090 Hb_010523_020 Hb_010523_020 Hb_000789_210--Hb_010523_020 Hb_003898_010 Hb_003898_010 Hb_000789_210--Hb_003898_010 Hb_000668_030--Hb_001115_060 Hb_000668_030--Hb_002281_060 Hb_000668_030--Hb_010523_020 Hb_000668_030--Hb_003898_010 Hb_000668_030--Hb_004984_090 Hb_001115_060--Hb_002281_060 Hb_001115_060--Hb_010523_020 Hb_001115_060--Hb_003898_010 Hb_001115_060--Hb_004984_090 Hb_001623_450 Hb_001623_450 Hb_004984_090--Hb_001623_450 Hb_000199_050 Hb_000199_050 Hb_004984_090--Hb_000199_050 Hb_004984_090--Hb_002281_060 Hb_002281_060--Hb_010523_020 Hb_002281_060--Hb_003898_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0360388 0 0.0447459 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.566551 0.899552 13.6322

CAGE analysis