Hb_143232_020

Information

Type -
Description -
Location Contig143232: 9057-10432
Sequence    

Annotation

kegg
ID rcu:RCOM_1691790
description serine-threonine protein kinase, plant-type, putative
nr
ID KDP25311.1
description hypothetical protein JCGZ_20467 [Jatropha curcas]
swissprot
ID Q9C9Y8
description Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1
trembl
ID A0A067JMV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20467 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive receptor kinase at5g58300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143232_020 0.0 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
2 Hb_073423_010 0.0330805343 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002486_030 0.0353318758 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
4 Hb_011111_010 0.0406957483 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
5 Hb_008579_010 0.0428083408 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
6 Hb_104855_020 0.0497423836 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_001623_020 0.0551626277 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
8 Hb_142691_010 0.0553355059 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
9 Hb_004117_360 0.0616972957 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
10 Hb_012691_040 0.0619494031 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
11 Hb_001514_110 0.0728984291 - - conserved hypothetical protein [Ricinus communis]
12 Hb_147137_020 0.0750956992 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
13 Hb_009683_060 0.0880078808 - - -
14 Hb_093204_010 0.0891830156 - - conserved hypothetical protein [Ricinus communis]
15 Hb_013726_100 0.0945739989 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
16 Hb_111908_010 0.0980153432 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000256_050 0.099261492 - - chitinase, putative [Ricinus communis]
18 Hb_189242_010 0.1007740669 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
19 Hb_001565_050 0.1047699941 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
20 Hb_000904_090 0.106644212 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]

Gene co-expression network

sample Hb_143232_020 Hb_143232_020 Hb_073423_010 Hb_073423_010 Hb_143232_020--Hb_073423_010 Hb_002486_030 Hb_002486_030 Hb_143232_020--Hb_002486_030 Hb_011111_010 Hb_011111_010 Hb_143232_020--Hb_011111_010 Hb_008579_010 Hb_008579_010 Hb_143232_020--Hb_008579_010 Hb_104855_020 Hb_104855_020 Hb_143232_020--Hb_104855_020 Hb_001623_020 Hb_001623_020 Hb_143232_020--Hb_001623_020 Hb_073423_010--Hb_002486_030 Hb_073423_010--Hb_008579_010 Hb_142691_010 Hb_142691_010 Hb_073423_010--Hb_142691_010 Hb_012691_040 Hb_012691_040 Hb_073423_010--Hb_012691_040 Hb_004117_360 Hb_004117_360 Hb_073423_010--Hb_004117_360 Hb_002486_030--Hb_008579_010 Hb_002486_030--Hb_142691_010 Hb_002486_030--Hb_012691_040 Hb_002486_030--Hb_104855_020 Hb_093204_010 Hb_093204_010 Hb_011111_010--Hb_093204_010 Hb_011111_010--Hb_073423_010 Hb_011111_010--Hb_004117_360 Hb_011111_010--Hb_002486_030 Hb_011111_010--Hb_008579_010 Hb_008579_010--Hb_142691_010 Hb_008579_010--Hb_012691_040 Hb_008579_010--Hb_104855_020 Hb_009683_060 Hb_009683_060 Hb_104855_020--Hb_009683_060 Hb_104855_020--Hb_142691_010 Hb_104855_020--Hb_001623_020 Hb_000256_050 Hb_000256_050 Hb_001623_020--Hb_000256_050 Hb_013726_100 Hb_013726_100 Hb_001623_020--Hb_013726_100 Hb_001623_020--Hb_009683_060 Hb_002475_110 Hb_002475_110 Hb_001623_020--Hb_002475_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.20997 0.0162264 0.0185923 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis