Hb_143243_010

Information

Type -
Description -
Location Contig143243: 8584-10757
Sequence    

Annotation

kegg
ID rcu:RCOM_1626990
description hypothetical protein
nr
ID XP_012084857.1
description PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15108 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11388: 9172-10613 , PASA_asmbl_11389: 8592-10613 , PASA_asmbl_11390: 9441-10778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143243_010 0.0 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
2 Hb_000483_380 0.113115954 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
3 Hb_002379_050 0.1157966363 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
4 Hb_003124_220 0.1165275616 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
5 Hb_000179_140 0.117644757 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
6 Hb_132697_010 0.1216140965 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000787_090 0.1244164586 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
8 Hb_000116_060 0.1277535226 - - plant ubiquilin, putative [Ricinus communis]
9 Hb_135831_010 0.1278684972 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
10 Hb_000256_190 0.1288304825 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
11 Hb_001347_040 0.1297281893 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
12 Hb_000718_070 0.1301840045 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001054_020 0.1306938397 - - glutamine synthetase [Hevea brasiliensis]
14 Hb_000212_320 0.131446634 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
15 Hb_025669_020 0.1334877494 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000933_020 0.1348670932 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002431_020 0.1366720855 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
18 Hb_000656_250 0.1385012988 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
19 Hb_158604_010 0.1397380883 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
20 Hb_001310_110 0.1403932826 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_143243_010 Hb_143243_010 Hb_000483_380 Hb_000483_380 Hb_143243_010--Hb_000483_380 Hb_002379_050 Hb_002379_050 Hb_143243_010--Hb_002379_050 Hb_003124_220 Hb_003124_220 Hb_143243_010--Hb_003124_220 Hb_000179_140 Hb_000179_140 Hb_143243_010--Hb_000179_140 Hb_132697_010 Hb_132697_010 Hb_143243_010--Hb_132697_010 Hb_000787_090 Hb_000787_090 Hb_143243_010--Hb_000787_090 Hb_003040_020 Hb_003040_020 Hb_000483_380--Hb_003040_020 Hb_158604_010 Hb_158604_010 Hb_000483_380--Hb_158604_010 Hb_033312_150 Hb_033312_150 Hb_000483_380--Hb_033312_150 Hb_013749_020 Hb_013749_020 Hb_000483_380--Hb_013749_020 Hb_000116_060 Hb_000116_060 Hb_000483_380--Hb_000116_060 Hb_000544_060 Hb_000544_060 Hb_000483_380--Hb_000544_060 Hb_014361_150 Hb_014361_150 Hb_002379_050--Hb_014361_150 Hb_006615_120 Hb_006615_120 Hb_002379_050--Hb_006615_120 Hb_002379_050--Hb_000116_060 Hb_000718_070 Hb_000718_070 Hb_002379_050--Hb_000718_070 Hb_000230_430 Hb_000230_430 Hb_002379_050--Hb_000230_430 Hb_000162_280 Hb_000162_280 Hb_002379_050--Hb_000162_280 Hb_003124_220--Hb_000718_070 Hb_001347_040 Hb_001347_040 Hb_003124_220--Hb_001347_040 Hb_002078_110 Hb_002078_110 Hb_003124_220--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_003124_220--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_003124_220--Hb_143395_010 Hb_000256_190 Hb_000256_190 Hb_003124_220--Hb_000256_190 Hb_017987_020 Hb_017987_020 Hb_000179_140--Hb_017987_020 Hb_002431_020 Hb_002431_020 Hb_000179_140--Hb_002431_020 Hb_002636_180 Hb_002636_180 Hb_000179_140--Hb_002636_180 Hb_000179_140--Hb_132697_010 Hb_002400_310 Hb_002400_310 Hb_000179_140--Hb_002400_310 Hb_132697_010--Hb_017987_020 Hb_132697_010--Hb_000787_090 Hb_132697_010--Hb_002431_020 Hb_075481_030 Hb_075481_030 Hb_132697_010--Hb_075481_030 Hb_000933_020 Hb_000933_020 Hb_132697_010--Hb_000933_020 Hb_000861_070 Hb_000861_070 Hb_132697_010--Hb_000861_070 Hb_000787_090--Hb_002431_020 Hb_000787_090--Hb_001347_040 Hb_004724_320 Hb_004724_320 Hb_000787_090--Hb_004724_320 Hb_001502_060 Hb_001502_060 Hb_000787_090--Hb_001502_060 Hb_000832_090 Hb_000832_090 Hb_000787_090--Hb_000832_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7342 42.9914 28.8365 39.9557 73.6398 40.6233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.477 14.9195 31.5111 18.421 6.97151

CAGE analysis