Hb_143398_010

Information

Type -
Description -
Location Contig143398: 3004-8714
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20630g
description POPTRDRAFT_1072526; hypothetical protein
nr
ID XP_012082769.1
description PREDICTED: peter Pan-like protein [Jatropha curcas]
swissprot
ID Q9ASU7
description Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1
trembl
ID A0A067JW89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13933 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143398_010 0.0 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
2 Hb_002271_020 0.0526949738 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
3 Hb_010180_010 0.0537499281 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
4 Hb_009557_070 0.05866523 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002473_130 0.0643565599 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
6 Hb_000045_090 0.0648025207 - - PREDICTED: syntaxin-31 [Jatropha curcas]
7 Hb_000329_030 0.0685083689 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
8 Hb_002477_330 0.0719923813 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
9 Hb_001287_080 0.0746341696 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008092_040 0.0759741116 - - PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
11 Hb_033594_120 0.0794004101 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
12 Hb_007416_280 0.0815017799 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000056_260 0.0819903249 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
14 Hb_002890_140 0.083093045 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
15 Hb_002182_080 0.0832940322 - - 3-5 exonuclease, putative [Ricinus communis]
16 Hb_000959_260 0.0839183953 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
17 Hb_005357_080 0.0839261851 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
18 Hb_000815_040 0.0862677918 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
19 Hb_002835_080 0.0867801487 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
20 Hb_005291_030 0.0877612441 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_143398_010 Hb_143398_010 Hb_002271_020 Hb_002271_020 Hb_143398_010--Hb_002271_020 Hb_010180_010 Hb_010180_010 Hb_143398_010--Hb_010180_010 Hb_009557_070 Hb_009557_070 Hb_143398_010--Hb_009557_070 Hb_002473_130 Hb_002473_130 Hb_143398_010--Hb_002473_130 Hb_000045_090 Hb_000045_090 Hb_143398_010--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_143398_010--Hb_000329_030 Hb_002271_020--Hb_002473_130 Hb_005291_030 Hb_005291_030 Hb_002271_020--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_002271_020--Hb_001287_080 Hb_005489_060 Hb_005489_060 Hb_002271_020--Hb_005489_060 Hb_001279_150 Hb_001279_150 Hb_002271_020--Hb_001279_150 Hb_001998_230 Hb_001998_230 Hb_010180_010--Hb_001998_230 Hb_004306_020 Hb_004306_020 Hb_010180_010--Hb_004306_020 Hb_002890_140 Hb_002890_140 Hb_010180_010--Hb_002890_140 Hb_010180_010--Hb_000329_030 Hb_010180_020 Hb_010180_020 Hb_010180_010--Hb_010180_020 Hb_009557_070--Hb_000329_030 Hb_009557_070--Hb_000045_090 Hb_007416_280 Hb_007416_280 Hb_009557_070--Hb_007416_280 Hb_003175_010 Hb_003175_010 Hb_009557_070--Hb_003175_010 Hb_003929_250 Hb_003929_250 Hb_009557_070--Hb_003929_250 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_002473_130--Hb_005291_030 Hb_002473_130--Hb_001279_150 Hb_002473_130--Hb_005489_060 Hb_002774_060 Hb_002774_060 Hb_000045_090--Hb_002774_060 Hb_000045_090--Hb_000329_030 Hb_004545_060 Hb_004545_060 Hb_000045_090--Hb_004545_060 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_000329_030--Hb_002774_060 Hb_000656_040 Hb_000656_040 Hb_000329_030--Hb_000656_040 Hb_000579_140 Hb_000579_140 Hb_000329_030--Hb_000579_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9711 6.24698 8.94425 13.9707 10.1583 24.0777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5353 18.8842 12.0695 9.7957 6.77496

CAGE analysis