Hb_143496_010

Information

Type -
Description -
Location Contig143496: 1663-4992
Sequence    

Annotation

kegg
ID gmx:100800747
description 40S ribosomal protein S3-3-like
nr
ID XP_003535989.1
description PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
swissprot
ID Q9FJA6
description 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1
trembl
ID A0A0B2SB57
description 40S ribosomal protein S3-3 OS=Glycine soja GN=glysoja_035389 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s3-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11433: 1574-5164 , PASA_asmbl_11434: 1575-5225 , PASA_asmbl_11435: 2453-2556 , PASA_asmbl_11436: 2578-2683
cDNA
(Sanger)
(ID:Location)		 017_D20.ab1: 1574-4707 , 038_P09.ab1: 1574-4952

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143496_010 0.0 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
2 Hb_010175_040 0.0572180548 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
3 Hb_003226_100 0.0633747733 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
4 Hb_017491_060 0.0699678663 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
5 Hb_001141_140 0.0717861702 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
6 Hb_003018_020 0.0729271013 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
7 Hb_000699_160 0.0729606037 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
8 Hb_005063_050 0.0745224796 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
9 Hb_010672_060 0.0765687154 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
10 Hb_000920_110 0.0776031184 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
11 Hb_000417_360 0.0796027693 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
12 Hb_001616_040 0.0797006946 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
13 Hb_002830_020 0.0817827691 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_008921_020 0.0824604235 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
15 Hb_004157_030 0.0839976413 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_004459_040 0.0846021509 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
17 Hb_005181_030 0.0847542019 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
18 Hb_002431_050 0.0861875826 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
19 Hb_143766_010 0.0862156018 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
20 Hb_153544_010 0.0864342158 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]

Gene co-expression network

sample Hb_143496_010 Hb_143496_010 Hb_010175_040 Hb_010175_040 Hb_143496_010--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_143496_010--Hb_003226_100 Hb_017491_060 Hb_017491_060 Hb_143496_010--Hb_017491_060 Hb_001141_140 Hb_001141_140 Hb_143496_010--Hb_001141_140 Hb_003018_020 Hb_003018_020 Hb_143496_010--Hb_003018_020 Hb_000699_160 Hb_000699_160 Hb_143496_010--Hb_000699_160 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_000920_110 Hb_000920_110 Hb_010175_040--Hb_000920_110 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_003226_100--Hb_000920_110 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003226_100--Hb_003018_020 Hb_002056_050 Hb_002056_050 Hb_003226_100--Hb_002056_050 Hb_003226_100--Hb_001616_040 Hb_006541_010 Hb_006541_010 Hb_017491_060--Hb_006541_010 Hb_007065_010 Hb_007065_010 Hb_017491_060--Hb_007065_010 Hb_017413_010 Hb_017413_010 Hb_017491_060--Hb_017413_010 Hb_017491_060--Hb_001616_040 Hb_017491_060--Hb_004157_030 Hb_006925_040 Hb_006925_040 Hb_001141_140--Hb_006925_040 Hb_000735_040 Hb_000735_040 Hb_001141_140--Hb_000735_040 Hb_001141_140--Hb_003226_100 Hb_007044_130 Hb_007044_130 Hb_001141_140--Hb_007044_130 Hb_001141_140--Hb_003018_020 Hb_003018_020--Hb_004157_030 Hb_174865_010 Hb_174865_010 Hb_003018_020--Hb_174865_010 Hb_000506_070 Hb_000506_070 Hb_003018_020--Hb_000506_070 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470 Hb_010672_060 Hb_010672_060 Hb_000699_160--Hb_010672_060 Hb_005063_050 Hb_005063_050 Hb_000699_160--Hb_005063_050 Hb_001221_310 Hb_001221_310 Hb_000699_160--Hb_001221_310 Hb_012022_120 Hb_012022_120 Hb_000699_160--Hb_012022_120 Hb_002830_020 Hb_002830_020 Hb_000699_160--Hb_002830_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.66097 4.27161 10.19 12.9969 11.4602 8.89049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1742 38.0016 15.9017 9.35837 6.29828

CAGE analysis