Hb_143629_040

Information

Type -
Description -
Location Contig143629: 13212-23127
Sequence    

Annotation

kegg
ID rcu:RCOM_1437220
description hypothetical protein
nr
ID XP_002512605.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SFT7
description Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1
trembl
ID B9RFT6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437220 PE=4 SV=1
Gene Ontology
ID GO:0004674
description inactive protein kinase selmodraft_444075

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000051_110 0.1083682211 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000221_270 0.109601723 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
4 Hb_001881_020 0.1175576499 - - clathrin binding protein, putative [Ricinus communis]
5 Hb_020178_070 0.1187478547 - - Protein Z, putative [Ricinus communis]
6 Hb_001279_140 0.1278336271 - - PREDICTED: cystinosin homolog [Jatropha curcas]
7 Hb_000395_080 0.131080158 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
8 Hb_003750_080 0.1338024633 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
9 Hb_010710_030 0.1349472761 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
10 Hb_000010_470 0.1381312884 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
11 Hb_008066_010 0.1402189979 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
12 Hb_000608_420 0.1410654913 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
13 Hb_012022_030 0.1423540207 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
14 Hb_002137_020 0.1424283082 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_005052_020 0.1427720994 - - -
16 Hb_000877_060 0.1427814392 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
17 Hb_007441_230 0.142896349 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
18 Hb_005215_030 0.1429000713 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
19 Hb_000617_260 0.1440760105 rubber biosynthesis Gene Name: SRPP2 small rubber particle protein [Hevea brasiliensis]
20 Hb_000069_460 0.145362944 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]

Gene co-expression network

sample Hb_143629_040 Hb_143629_040 Hb_000051_110 Hb_000051_110 Hb_143629_040--Hb_000051_110 Hb_000221_270 Hb_000221_270 Hb_143629_040--Hb_000221_270 Hb_001881_020 Hb_001881_020 Hb_143629_040--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_143629_040--Hb_020178_070 Hb_001279_140 Hb_001279_140 Hb_143629_040--Hb_001279_140 Hb_000395_080 Hb_000395_080 Hb_143629_040--Hb_000395_080 Hb_008066_010 Hb_008066_010 Hb_000051_110--Hb_008066_010 Hb_001604_010 Hb_001604_010 Hb_000051_110--Hb_001604_010 Hb_000051_110--Hb_000221_270 Hb_009111_050 Hb_009111_050 Hb_000051_110--Hb_009111_050 Hb_000069_460 Hb_000069_460 Hb_000051_110--Hb_000069_460 Hb_000190_140 Hb_000190_140 Hb_000051_110--Hb_000190_140 Hb_000221_270--Hb_008066_010 Hb_000221_270--Hb_000069_460 Hb_005548_010 Hb_005548_010 Hb_000221_270--Hb_005548_010 Hb_002902_110 Hb_002902_110 Hb_000221_270--Hb_002902_110 Hb_010710_030 Hb_010710_030 Hb_000221_270--Hb_010710_030 Hb_000671_150 Hb_000671_150 Hb_001881_020--Hb_000671_150 Hb_021650_030 Hb_021650_030 Hb_001881_020--Hb_021650_030 Hb_000091_090 Hb_000091_090 Hb_001881_020--Hb_000091_090 Hb_001881_020--Hb_020178_070 Hb_002411_200 Hb_002411_200 Hb_001881_020--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_001881_020--Hb_000086_570 Hb_001248_130 Hb_001248_130 Hb_020178_070--Hb_001248_130 Hb_000567_260 Hb_000567_260 Hb_020178_070--Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_020178_070--Hb_001671_020 Hb_020178_070--Hb_021650_030 Hb_020178_070--Hb_002411_200 Hb_001472_120 Hb_001472_120 Hb_001279_140--Hb_001472_120 Hb_000003_480 Hb_000003_480 Hb_001279_140--Hb_000003_480 Hb_000057_200 Hb_000057_200 Hb_001279_140--Hb_000057_200 Hb_000421_210 Hb_000421_210 Hb_001279_140--Hb_000421_210 Hb_000260_220 Hb_000260_220 Hb_001279_140--Hb_000260_220 Hb_001279_140--Hb_000395_080 Hb_011828_020 Hb_011828_020 Hb_000395_080--Hb_011828_020 Hb_000877_060 Hb_000877_060 Hb_000395_080--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_000395_080--Hb_001477_130 Hb_000696_340 Hb_000696_340 Hb_000395_080--Hb_000696_340 Hb_002137_020 Hb_002137_020 Hb_000395_080--Hb_002137_020 Hb_005215_030 Hb_005215_030 Hb_000395_080--Hb_005215_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254743 0.198791 0.0466472 0.0675329 0.236644 0.475117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.625168 0.245994 0.553943 0.372921 0.0545365

CAGE analysis