Hb_143629_050

Information

Type -
Description -
Location Contig143629: 24758-26033
Sequence    

Annotation

kegg
ID rcu:RCOM_1437200
description hypothetical protein
nr
ID XP_002512603.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3E6P4
description F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1
trembl
ID B9RFT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11480: 24753-26298 , PASA_asmbl_11481: 24757-25509
cDNA
(Sanger)
(ID:Location)		 002_E03.ab1: 24757-25824 , 002_K18.ab1: 24757-25509 , 006_B06.ab1: 24757-25809 , 012_D03.ab1: 24757-25836 , 012_M17.ab1: 24757-25765 , 020_H22.ab1: 24757-25788 , 027_O16.ab1: 24757-25032 , 034_I08.ab1: 24757-25862 , 043_L04.ab1: 24757-25806

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010931_110 0.118575145 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_030620_010 0.1419568342 - - -
4 Hb_006452_060 0.1421519016 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_004032_240 0.1531257899 - - electron transporter, putative [Ricinus communis]
6 Hb_000958_010 0.1584956229 - - conserved hypothetical protein [Ricinus communis]
7 Hb_030982_040 0.1586844923 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_001198_090 0.159821566 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
9 Hb_008453_020 0.1599947096 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
10 Hb_002200_110 0.1612176131 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000014_100 0.1627048514 - - -
12 Hb_005657_010 0.1670799105 - - -
13 Hb_003906_120 0.174138868 - - -
14 Hb_003893_170 0.1774111352 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
15 Hb_003125_050 0.1776455143 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
16 Hb_001767_010 0.1808025897 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
17 Hb_019153_040 0.1808891661 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
18 Hb_000300_530 0.1812560611 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
19 Hb_002983_020 0.1814259476 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
20 Hb_000684_370 0.1817799522 - - -

Gene co-expression network

sample Hb_143629_050 Hb_143629_050 Hb_010931_110 Hb_010931_110 Hb_143629_050--Hb_010931_110 Hb_030620_010 Hb_030620_010 Hb_143629_050--Hb_030620_010 Hb_006452_060 Hb_006452_060 Hb_143629_050--Hb_006452_060 Hb_004032_240 Hb_004032_240 Hb_143629_050--Hb_004032_240 Hb_000958_010 Hb_000958_010 Hb_143629_050--Hb_000958_010 Hb_030982_040 Hb_030982_040 Hb_143629_050--Hb_030982_040 Hb_130177_010 Hb_130177_010 Hb_010931_110--Hb_130177_010 Hb_001198_090 Hb_001198_090 Hb_010931_110--Hb_001198_090 Hb_010931_110--Hb_004032_240 Hb_000987_050 Hb_000987_050 Hb_010931_110--Hb_000987_050 Hb_053543_010 Hb_053543_010 Hb_010931_110--Hb_053543_010 Hb_004223_230 Hb_004223_230 Hb_030620_010--Hb_004223_230 Hb_102864_010 Hb_102864_010 Hb_030620_010--Hb_102864_010 Hb_000329_690 Hb_000329_690 Hb_030620_010--Hb_000329_690 Hb_000117_040 Hb_000117_040 Hb_030620_010--Hb_000117_040 Hb_030620_010--Hb_006452_060 Hb_002200_110 Hb_002200_110 Hb_030620_010--Hb_002200_110 Hb_001220_040 Hb_001220_040 Hb_006452_060--Hb_001220_040 Hb_000291_210 Hb_000291_210 Hb_006452_060--Hb_000291_210 Hb_000085_310 Hb_000085_310 Hb_006452_060--Hb_000085_310 Hb_006452_060--Hb_030982_040 Hb_000436_050 Hb_000436_050 Hb_006452_060--Hb_000436_050 Hb_004032_240--Hb_000958_010 Hb_003893_170 Hb_003893_170 Hb_004032_240--Hb_003893_170 Hb_008453_020 Hb_008453_020 Hb_004032_240--Hb_008453_020 Hb_019153_040 Hb_019153_040 Hb_004032_240--Hb_019153_040 Hb_186982_030 Hb_186982_030 Hb_004032_240--Hb_186982_030 Hb_000958_010--Hb_008453_020 Hb_001514_200 Hb_001514_200 Hb_000958_010--Hb_001514_200 Hb_000958_010--Hb_000117_040 Hb_011609_190 Hb_011609_190 Hb_000958_010--Hb_011609_190 Hb_000958_010--Hb_002200_110 Hb_005653_120 Hb_005653_120 Hb_030982_040--Hb_005653_120 Hb_000809_050 Hb_000809_050 Hb_030982_040--Hb_000809_050 Hb_015974_010 Hb_015974_010 Hb_030982_040--Hb_015974_010 Hb_000072_280 Hb_000072_280 Hb_030982_040--Hb_000072_280 Hb_001102_010 Hb_001102_010 Hb_030982_040--Hb_001102_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1232.47 49.0583 48.2379 51.7769 2115.76 508.976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
506.751 901.509 1165.95 94.3871 32.5863

CAGE analysis