Hb_143629_090

Information

Type -
Description -
Location Contig143629: 62945-65678
Sequence    

Annotation

kegg
ID pvu:PHAVU_007G206900g
description hypothetical protein
nr
ID XP_012088798.1
description PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11491: 63707-64391
cDNA
(Sanger)
(ID:Location)		 026_F05.ab1: 63707-64208

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_090 0.0 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
2 Hb_000249_130 0.1018566889 - - hypothetical protein RCOM_0254640 [Ricinus communis]
3 Hb_004800_160 0.108547332 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
4 Hb_152439_020 0.1157931782 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
5 Hb_001437_240 0.1173367738 - - -
6 Hb_024952_010 0.1197008238 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
7 Hb_003943_030 0.1204609595 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
8 Hb_001606_070 0.1250932924 - - fimbrin, putative [Ricinus communis]
9 Hb_000749_250 0.1282767545 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
10 Hb_000861_040 0.1287305205 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
11 Hb_000003_840 0.1314700049 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
12 Hb_000157_010 0.132657101 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_183612_100 0.1329702962 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
14 Hb_001946_320 0.1350544304 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
15 Hb_001396_230 0.135186982 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
16 Hb_000193_250 0.1364412025 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
17 Hb_007229_060 0.1369691719 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
18 Hb_004882_020 0.1370533609 - - -
19 Hb_002392_040 0.1377916842 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001232_130 0.1390268413 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]

Gene co-expression network

sample Hb_143629_090 Hb_143629_090 Hb_000249_130 Hb_000249_130 Hb_143629_090--Hb_000249_130 Hb_004800_160 Hb_004800_160 Hb_143629_090--Hb_004800_160 Hb_152439_020 Hb_152439_020 Hb_143629_090--Hb_152439_020 Hb_001437_240 Hb_001437_240 Hb_143629_090--Hb_001437_240 Hb_024952_010 Hb_024952_010 Hb_143629_090--Hb_024952_010 Hb_003943_030 Hb_003943_030 Hb_143629_090--Hb_003943_030 Hb_003030_080 Hb_003030_080 Hb_000249_130--Hb_003030_080 Hb_003497_030 Hb_003497_030 Hb_000249_130--Hb_003497_030 Hb_000249_130--Hb_024952_010 Hb_001606_070 Hb_001606_070 Hb_000249_130--Hb_001606_070 Hb_000380_180 Hb_000380_180 Hb_000249_130--Hb_000380_180 Hb_000861_040 Hb_000861_040 Hb_004800_160--Hb_000861_040 Hb_005357_150 Hb_005357_150 Hb_004800_160--Hb_005357_150 Hb_000025_480 Hb_000025_480 Hb_004800_160--Hb_000025_480 Hb_010402_010 Hb_010402_010 Hb_004800_160--Hb_010402_010 Hb_000427_030 Hb_000427_030 Hb_004800_160--Hb_000427_030 Hb_001981_090 Hb_001981_090 Hb_004800_160--Hb_001981_090 Hb_000193_250 Hb_000193_250 Hb_152439_020--Hb_000193_250 Hb_000157_010 Hb_000157_010 Hb_152439_020--Hb_000157_010 Hb_183612_100 Hb_183612_100 Hb_152439_020--Hb_183612_100 Hb_004306_060 Hb_004306_060 Hb_152439_020--Hb_004306_060 Hb_002498_060 Hb_002498_060 Hb_152439_020--Hb_002498_060 Hb_004882_020 Hb_004882_020 Hb_001437_240--Hb_004882_020 Hb_001437_240--Hb_183612_100 Hb_002307_090 Hb_002307_090 Hb_001437_240--Hb_002307_090 Hb_002936_050 Hb_002936_050 Hb_001437_240--Hb_002936_050 Hb_001437_240--Hb_004800_160 Hb_001396_230 Hb_001396_230 Hb_024952_010--Hb_001396_230 Hb_024952_010--Hb_001606_070 Hb_005779_100 Hb_005779_100 Hb_024952_010--Hb_005779_100 Hb_001153_220 Hb_001153_220 Hb_024952_010--Hb_001153_220 Hb_002352_010 Hb_002352_010 Hb_024952_010--Hb_002352_010 Hb_024952_010--Hb_000861_040 Hb_001959_160 Hb_001959_160 Hb_003943_030--Hb_001959_160 Hb_000749_250 Hb_000749_250 Hb_003943_030--Hb_000749_250 Hb_001232_130 Hb_001232_130 Hb_003943_030--Hb_001232_130 Hb_007429_030 Hb_007429_030 Hb_003943_030--Hb_007429_030 Hb_000156_100 Hb_000156_100 Hb_003943_030--Hb_000156_100 Hb_002290_040 Hb_002290_040 Hb_003943_030--Hb_002290_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6571 2.79395 0.414884 1.94354 9.68535 8.52774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4262 12.4851 32.8093 2.66259 0.395138

CAGE analysis