Hb_143629_110

Information

Type -
Description -
Location Contig143629: 74994-79641
Sequence    

Annotation

kegg
ID rcu:RCOM_1437120
description glutamyl-tRNA synthetase, cytoplasmic, putative (EC:6.1.1.18)
nr
ID XP_002512595.1
description glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
swissprot
ID O13775
description Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gus1 PE=1 SV=1
trembl
ID B9RFS6
description Glutamyl-tRNA synthetase, cytoplasmic, putative OS=Ricinus communis GN=RCOM_1437120 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable glutamate--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11494: 68650-74647 , PASA_asmbl_11495: 68650-74647 , PASA_asmbl_11496: 75191-79661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_110 0.0 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
2 Hb_032202_200 0.0571348934 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_123903_010 0.0582921418 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
4 Hb_000390_320 0.0596192689 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
5 Hb_001617_060 0.0720206584 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
6 Hb_025477_040 0.0741814285 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
7 Hb_000617_180 0.0748965627 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
8 Hb_002815_030 0.0752098617 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
9 Hb_000700_140 0.0756101684 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
10 Hb_010174_040 0.0756262533 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
11 Hb_003464_080 0.0772440546 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
12 Hb_000613_050 0.0776348204 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
13 Hb_002217_030 0.0792574724 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
14 Hb_000703_150 0.0809246086 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
15 Hb_000592_030 0.0815104709 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
16 Hb_001157_090 0.0823662232 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
17 Hb_002783_240 0.0830234069 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
18 Hb_001143_160 0.0832518596 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
19 Hb_000008_290 0.0832539176 - - PREDICTED: protein SAND [Jatropha curcas]
20 Hb_000345_240 0.0835406241 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_143629_110 Hb_143629_110 Hb_032202_200 Hb_032202_200 Hb_143629_110--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_143629_110--Hb_123903_010 Hb_000390_320 Hb_000390_320 Hb_143629_110--Hb_000390_320 Hb_001617_060 Hb_001617_060 Hb_143629_110--Hb_001617_060 Hb_025477_040 Hb_025477_040 Hb_143629_110--Hb_025477_040 Hb_000617_180 Hb_000617_180 Hb_143629_110--Hb_000617_180 Hb_032202_200--Hb_025477_040 Hb_032202_200--Hb_123903_010 Hb_003163_020 Hb_003163_020 Hb_032202_200--Hb_003163_020 Hb_011930_160 Hb_011930_160 Hb_032202_200--Hb_011930_160 Hb_010174_040 Hb_010174_040 Hb_032202_200--Hb_010174_040 Hb_009175_020 Hb_009175_020 Hb_123903_010--Hb_009175_020 Hb_002815_030 Hb_002815_030 Hb_123903_010--Hb_002815_030 Hb_000975_040 Hb_000975_040 Hb_123903_010--Hb_000975_040 Hb_123903_010--Hb_000390_320 Hb_002375_010 Hb_002375_010 Hb_000390_320--Hb_002375_010 Hb_000680_090 Hb_000680_090 Hb_000390_320--Hb_000680_090 Hb_001195_320 Hb_001195_320 Hb_000390_320--Hb_001195_320 Hb_002329_040 Hb_002329_040 Hb_000390_320--Hb_002329_040 Hb_000613_080 Hb_000613_080 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030 Hb_025477_040--Hb_123903_010 Hb_025477_040--Hb_002815_030 Hb_012053_080 Hb_012053_080 Hb_025477_040--Hb_012053_080 Hb_025477_040--Hb_002329_040 Hb_021297_050 Hb_021297_050 Hb_025477_040--Hb_021297_050 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000347_070 Hb_000347_070 Hb_000617_180--Hb_000347_070 Hb_000617_180--Hb_002375_010 Hb_004619_030 Hb_004619_030 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.0927 27.2128 22.8312 35.151 43.0966 44.899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6083 20.7062 34.4866 52.6503 21.6427

CAGE analysis