Hb_143629_120

Information

Type -
Description -
Location Contig143629: 80853-82158
Sequence    

Annotation

kegg
ID rcu:RCOM_1437110
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002512594.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q6I544
description Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1
trembl
ID B9RFS5
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1437110 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein 5-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11498: 81136-81934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_120 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_008686_010 0.1002758764 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001195_550 0.1128580417 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
4 Hb_000599_330 0.1133964532 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
5 Hb_015941_010 0.118987932 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_169893_010 0.1268853455 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
7 Hb_012286_060 0.1286193438 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
8 Hb_000963_050 0.1326596035 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
9 Hb_002639_050 0.13349406 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_004450_020 0.1345909552 - - serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_005496_040 0.135133797 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
12 Hb_070498_010 0.1352127997 - - receptor kinase, putative [Ricinus communis]
13 Hb_007904_280 0.135214607 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
14 Hb_002301_400 0.1383578608 - - structural constituent of cell wall, putative [Ricinus communis]
15 Hb_000077_280 0.1384799539 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_003029_120 0.1393921767 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
17 Hb_000030_020 0.1394438451 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
18 Hb_002518_220 0.1402784628 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
19 Hb_000032_420 0.1432620233 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
20 Hb_004223_060 0.1433040051 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]

Gene co-expression network

sample Hb_143629_120 Hb_143629_120 Hb_008686_010 Hb_008686_010 Hb_143629_120--Hb_008686_010 Hb_001195_550 Hb_001195_550 Hb_143629_120--Hb_001195_550 Hb_000599_330 Hb_000599_330 Hb_143629_120--Hb_000599_330 Hb_015941_010 Hb_015941_010 Hb_143629_120--Hb_015941_010 Hb_169893_010 Hb_169893_010 Hb_143629_120--Hb_169893_010 Hb_012286_060 Hb_012286_060 Hb_143629_120--Hb_012286_060 Hb_008686_010--Hb_169893_010 Hb_005496_040 Hb_005496_040 Hb_008686_010--Hb_005496_040 Hb_008686_010--Hb_001195_550 Hb_070498_010 Hb_070498_010 Hb_008686_010--Hb_070498_010 Hb_000003_750 Hb_000003_750 Hb_008686_010--Hb_000003_750 Hb_001195_550--Hb_169893_010 Hb_001195_550--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_001195_550--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_001195_550--Hb_001159_090 Hb_002639_050 Hb_002639_050 Hb_001195_550--Hb_002639_050 Hb_000030_020 Hb_000030_020 Hb_000599_330--Hb_000030_020 Hb_000963_050 Hb_000963_050 Hb_000599_330--Hb_000963_050 Hb_000599_330--Hb_012286_060 Hb_003029_120 Hb_003029_120 Hb_000599_330--Hb_003029_120 Hb_000011_070 Hb_000011_070 Hb_000599_330--Hb_000011_070 Hb_001775_080 Hb_001775_080 Hb_015941_010--Hb_001775_080 Hb_000749_290 Hb_000749_290 Hb_015941_010--Hb_000749_290 Hb_002078_390 Hb_002078_390 Hb_015941_010--Hb_002078_390 Hb_005784_010 Hb_005784_010 Hb_015941_010--Hb_005784_010 Hb_001951_080 Hb_001951_080 Hb_015941_010--Hb_001951_080 Hb_169893_010--Hb_070498_010 Hb_169893_010--Hb_002301_400 Hb_003750_120 Hb_003750_120 Hb_169893_010--Hb_003750_120 Hb_128196_010 Hb_128196_010 Hb_169893_010--Hb_128196_010 Hb_012286_060--Hb_000030_020 Hb_012286_060--Hb_000963_050 Hb_005348_150 Hb_005348_150 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_118939_010 Hb_118939_010 Hb_012286_060--Hb_118939_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.57833 12.2614 36.0285 52.1876 1.46138 2.17136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.375621 0.820734 0.0609964 2.31562 18.7269

CAGE analysis