Hb_143629_140

Information

Type -
Description -
Location Contig143629: 83403-87706
Sequence    

Annotation

kegg
ID rcu:RCOM_0833820
description Ran GTPase binding protein, putative
nr
ID XP_002527043.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q8GZ92
description Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1
trembl
ID B9SM24
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0833820 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_140 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_001832_040 0.1196358706 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004108_060 0.1232624315 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
4 Hb_001472_160 0.1319848097 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
5 Hb_000349_240 0.1329542664 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
6 Hb_007192_090 0.1366409708 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
7 Hb_005211_020 0.1401151196 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
8 Hb_015778_060 0.1434771036 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
9 Hb_002973_110 0.1443752685 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_159809_090 0.1468026429 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
11 Hb_000110_270 0.1469730302 - - prp4, putative [Ricinus communis]
12 Hb_000617_250 0.1490299366 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
13 Hb_065408_010 0.1493929741 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
14 Hb_000320_360 0.1500167983 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
15 Hb_025477_050 0.1508286398 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_000220_210 0.1516738733 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
17 Hb_007769_040 0.1520952576 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_000069_490 0.1557213896 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002282_070 0.1559338947 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
20 Hb_015026_080 0.1568315374 - - -

Gene co-expression network

sample Hb_143629_140 Hb_143629_140 Hb_001832_040 Hb_001832_040 Hb_143629_140--Hb_001832_040 Hb_004108_060 Hb_004108_060 Hb_143629_140--Hb_004108_060 Hb_001472_160 Hb_001472_160 Hb_143629_140--Hb_001472_160 Hb_000349_240 Hb_000349_240 Hb_143629_140--Hb_000349_240 Hb_007192_090 Hb_007192_090 Hb_143629_140--Hb_007192_090 Hb_005211_020 Hb_005211_020 Hb_143629_140--Hb_005211_020 Hb_015026_080 Hb_015026_080 Hb_001832_040--Hb_015026_080 Hb_000069_490 Hb_000069_490 Hb_001832_040--Hb_000069_490 Hb_001832_040--Hb_000349_240 Hb_002973_110 Hb_002973_110 Hb_001832_040--Hb_002973_110 Hb_001790_080 Hb_001790_080 Hb_001832_040--Hb_001790_080 Hb_002660_190 Hb_002660_190 Hb_004108_060--Hb_002660_190 Hb_004108_060--Hb_001472_160 Hb_002282_070 Hb_002282_070 Hb_004108_060--Hb_002282_070 Hb_000529_180 Hb_000529_180 Hb_004108_060--Hb_000529_180 Hb_001377_040 Hb_001377_040 Hb_004108_060--Hb_001377_040 Hb_001427_040 Hb_001427_040 Hb_004108_060--Hb_001427_040 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_004884_180 Hb_004884_180 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_001472_160--Hb_002973_110 Hb_000349_240--Hb_001790_080 Hb_018118_010 Hb_018118_010 Hb_000349_240--Hb_018118_010 Hb_009252_040 Hb_009252_040 Hb_000349_240--Hb_009252_040 Hb_000087_140 Hb_000087_140 Hb_000349_240--Hb_000087_140 Hb_000033_110 Hb_000033_110 Hb_000349_240--Hb_000033_110 Hb_000007_010 Hb_000007_010 Hb_000349_240--Hb_000007_010 Hb_007192_090--Hb_001472_160 Hb_001828_120 Hb_001828_120 Hb_007192_090--Hb_001828_120 Hb_007769_040 Hb_007769_040 Hb_007192_090--Hb_007769_040 Hb_007192_090--Hb_002973_110 Hb_007192_090--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007192_090--Hb_000589_110 Hb_002600_060 Hb_002600_060 Hb_005211_020--Hb_002600_060 Hb_000826_070 Hb_000826_070 Hb_005211_020--Hb_000826_070 Hb_005211_020--Hb_002973_110 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_013459_020 Hb_013459_020 Hb_005211_020--Hb_013459_020 Hb_000925_090 Hb_000925_090 Hb_005211_020--Hb_000925_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231676 0.79744 0.629193 0.275503 0.491854 0.373693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.57857 0.189608 0.13996 0.457069 1.78932

CAGE analysis