Hb_143629_150

Information

Type -
Description -
Location Contig143629: 92156-98721
Sequence    

Annotation

kegg
ID vvi:100242559
description flap endonuclease 1
nr
ID XP_008246338.1
description PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
swissprot
ID C6TEX6
description Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1
trembl
ID F6I4J0
description Flap endonuclease 1 OS=Vitis vinifera GN=FEN1 PE=3 SV=1
Gene Ontology
ID GO:0005654
description flap endonuclease 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11500: 94295-96840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_150 0.0 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
2 Hb_001301_220 0.0711428209 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
3 Hb_005588_090 0.0727776411 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
4 Hb_001089_070 0.0754141782 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
5 Hb_005053_010 0.0839471625 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
6 Hb_000318_120 0.0856268711 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
7 Hb_032202_120 0.0860605652 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
8 Hb_000139_260 0.0864457177 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
9 Hb_005289_040 0.086752349 - - poly(A) polymerase, putative [Ricinus communis]
10 Hb_000101_380 0.0875501187 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
11 Hb_000915_080 0.0875847861 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
12 Hb_000007_280 0.087680958 - - hypothetical protein VITISV_000066 [Vitis vinifera]
13 Hb_002073_190 0.0887745269 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
14 Hb_160459_040 0.090027028 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
15 Hb_000086_560 0.0901925041 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
16 Hb_001005_030 0.0918072648 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
17 Hb_001821_160 0.0924587239 - - serine/arginine rich splicing factor, putative [Ricinus communis]
18 Hb_007657_020 0.0927107068 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
19 Hb_002092_080 0.0927687867 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
20 Hb_002783_170 0.0937826117 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_143629_150 Hb_143629_150 Hb_001301_220 Hb_001301_220 Hb_143629_150--Hb_001301_220 Hb_005588_090 Hb_005588_090 Hb_143629_150--Hb_005588_090 Hb_001089_070 Hb_001089_070 Hb_143629_150--Hb_001089_070 Hb_005053_010 Hb_005053_010 Hb_143629_150--Hb_005053_010 Hb_000318_120 Hb_000318_120 Hb_143629_150--Hb_000318_120 Hb_032202_120 Hb_032202_120 Hb_143629_150--Hb_032202_120 Hb_001832_130 Hb_001832_130 Hb_001301_220--Hb_001832_130 Hb_001077_030 Hb_001077_030 Hb_001301_220--Hb_001077_030 Hb_002042_030 Hb_002042_030 Hb_001301_220--Hb_002042_030 Hb_001301_220--Hb_005053_010 Hb_000718_070 Hb_000718_070 Hb_001301_220--Hb_000718_070 Hb_004267_040 Hb_004267_040 Hb_005588_090--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_005289_040 Hb_005289_040 Hb_005588_090--Hb_005289_040 Hb_004785_100 Hb_004785_100 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_001821_160 Hb_001821_160 Hb_005588_090--Hb_001821_160 Hb_016777_040 Hb_016777_040 Hb_001089_070--Hb_016777_040 Hb_001089_070--Hb_005289_040 Hb_000603_030 Hb_000603_030 Hb_001089_070--Hb_000603_030 Hb_001005_030 Hb_001005_030 Hb_001089_070--Hb_001005_030 Hb_021943_080 Hb_021943_080 Hb_001089_070--Hb_021943_080 Hb_001089_070--Hb_005588_090 Hb_160459_040 Hb_160459_040 Hb_005053_010--Hb_160459_040 Hb_009771_110 Hb_009771_110 Hb_005053_010--Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_005053_010--Hb_006618_090 Hb_001504_040 Hb_001504_040 Hb_005053_010--Hb_001504_040 Hb_007929_080 Hb_007929_080 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_055235_020 Hb_055235_020 Hb_000318_120--Hb_055235_020 Hb_000134_270 Hb_000134_270 Hb_000318_120--Hb_000134_270 Hb_003943_020 Hb_003943_020 Hb_000318_120--Hb_003943_020 Hb_000523_080 Hb_000523_080 Hb_000318_120--Hb_000523_080 Hb_007044_110 Hb_007044_110 Hb_000318_120--Hb_007044_110 Hb_000563_420 Hb_000563_420 Hb_000318_120--Hb_000563_420 Hb_008103_070 Hb_008103_070 Hb_032202_120--Hb_008103_070 Hb_001433_070 Hb_001433_070 Hb_032202_120--Hb_001433_070 Hb_032202_120--Hb_005289_040 Hb_012753_170 Hb_012753_170 Hb_032202_120--Hb_012753_170 Hb_002890_120 Hb_002890_120 Hb_032202_120--Hb_002890_120 Hb_032202_120--Hb_005588_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93965 7.51127 11.0938 8.71489 14.1801 11.3323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.77275 5.80132 2.63497 8.86341 7.54116

CAGE analysis