Hb_143629_170

Information

Type -
Description -
Location Contig143629: 110884-114902
Sequence    

Annotation

kegg
ID rcu:RCOM_1436870
description pectin acetylesterase, putative
nr
ID XP_012088806.1
description PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
swissprot
ID Q9SFF6
description Pectin acetylesterase 12 OS=Arabidopsis thaliana GN=PAE12 PE=2 SV=1
trembl
ID A0A067JUW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23157 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11501: 110891-115001 , PASA_asmbl_11502: 110891-114813
cDNA
(Sanger)
(ID:Location)		 028_C14.ab1: 110891-112838

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_170 0.0 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
2 Hb_128986_010 0.0537630729 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002740_050 0.0587018027 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
4 Hb_004943_020 0.0590664565 - - cationic amino acid transporter, putative [Ricinus communis]
5 Hb_006242_050 0.0618166511 - - Osmotin precursor, putative [Ricinus communis]
6 Hb_003417_050 0.0626334088 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_003855_060 0.0640076447 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
8 Hb_001278_120 0.0700800696 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
9 Hb_005656_120 0.0785261572 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
10 Hb_007163_110 0.0802194623 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
11 Hb_149694_010 0.0813283387 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
12 Hb_002062_010 0.0819797135 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
13 Hb_005269_060 0.0829412044 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
14 Hb_004650_110 0.0841103372 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
15 Hb_007904_150 0.0844895877 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
16 Hb_000017_180 0.0875658732 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
17 Hb_004459_010 0.0876961338 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
18 Hb_007483_090 0.0898004079 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002119_100 0.0911485105 - - cytochrome B561, putative [Ricinus communis]
20 Hb_061256_020 0.0941757036 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]

Gene co-expression network

sample Hb_143629_170 Hb_143629_170 Hb_128986_010 Hb_128986_010 Hb_143629_170--Hb_128986_010 Hb_002740_050 Hb_002740_050 Hb_143629_170--Hb_002740_050 Hb_004943_020 Hb_004943_020 Hb_143629_170--Hb_004943_020 Hb_006242_050 Hb_006242_050 Hb_143629_170--Hb_006242_050 Hb_003417_050 Hb_003417_050 Hb_143629_170--Hb_003417_050 Hb_003855_060 Hb_003855_060 Hb_143629_170--Hb_003855_060 Hb_002062_010 Hb_002062_010 Hb_128986_010--Hb_002062_010 Hb_128986_010--Hb_003417_050 Hb_001278_120 Hb_001278_120 Hb_128986_010--Hb_001278_120 Hb_005656_120 Hb_005656_120 Hb_128986_010--Hb_005656_120 Hb_007483_090 Hb_007483_090 Hb_128986_010--Hb_007483_090 Hb_002740_050--Hb_003855_060 Hb_007904_150 Hb_007904_150 Hb_002740_050--Hb_007904_150 Hb_002119_100 Hb_002119_100 Hb_002740_050--Hb_002119_100 Hb_149694_010 Hb_149694_010 Hb_002740_050--Hb_149694_010 Hb_000329_780 Hb_000329_780 Hb_002740_050--Hb_000329_780 Hb_004943_020--Hb_001278_120 Hb_004943_020--Hb_003855_060 Hb_000343_070 Hb_000343_070 Hb_004943_020--Hb_000343_070 Hb_004943_020--Hb_007904_150 Hb_004459_010 Hb_004459_010 Hb_004943_020--Hb_004459_010 Hb_006242_050--Hb_003417_050 Hb_005842_010 Hb_005842_010 Hb_006242_050--Hb_005842_010 Hb_006242_050--Hb_128986_010 Hb_007163_110 Hb_007163_110 Hb_006242_050--Hb_007163_110 Hb_006242_050--Hb_007483_090 Hb_003417_050--Hb_007483_090 Hb_003417_050--Hb_002062_010 Hb_003417_050--Hb_002119_100 Hb_003417_050--Hb_005656_120 Hb_003855_060--Hb_007904_150 Hb_001981_050 Hb_001981_050 Hb_003855_060--Hb_001981_050 Hb_000318_310 Hb_000318_310 Hb_003855_060--Hb_000318_310 Hb_185811_010 Hb_185811_010 Hb_003855_060--Hb_185811_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0132155 0.490544 8.49118 19.3384 0 0.0131697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0300971 0 0 0.746351 14.7815

CAGE analysis