Hb_143629_220

Information

Type -
Description -
Location Contig143629: 155970-157102
Sequence    

Annotation

kegg
ID pda:103696736
description hydrophobic protein LTI6B
nr
ID XP_008776670.1
description PREDICTED: hydrophobic protein LTI6B [Phoenix dactylifera]
swissprot
ID Q0DKW8
description Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1
trembl
ID M0S934
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0016021
description hydrophobic protein lti6a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11510: 156121-157037 , PASA_asmbl_11511: 156461-156835
cDNA
(Sanger)
(ID:Location)		 023_B06.ab1: 156121-157034 , 025_N17.ab1: 156117-157009 , 030_F09.ab1: 156125-157034 , 049_C10.ab1: 156147-157025 , 050_M24.ab1: 156117-157037

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_220 0.0 - - PREDICTED: hydrophobic protein LTI6B [Phoenix dactylifera]
2 Hb_005496_030 0.1191386669 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
3 Hb_001053_160 0.1323788568 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
4 Hb_002316_060 0.1328380864 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
5 Hb_000531_020 0.1328645426 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
6 Hb_001314_100 0.132921332 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
7 Hb_000526_040 0.1348566862 - - 60S ribosomal protein L6, putative [Ricinus communis]
8 Hb_000483_160 0.1376513253 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
9 Hb_000395_240 0.1380619231 - - hypothetical protein CICLE_v10010039mg [Citrus clementina]
10 Hb_001247_350 0.1403130991 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
11 Hb_004297_100 0.1437421713 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
12 Hb_000883_050 0.1458412276 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
13 Hb_000545_150 0.1460925412 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
14 Hb_023732_070 0.1469269741 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
15 Hb_000094_020 0.1490418875 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
16 Hb_020247_040 0.1491450968 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
17 Hb_003216_100 0.1492104462 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
18 Hb_001133_020 0.1494672429 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
19 Hb_155764_020 0.1512395906 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
20 Hb_001080_080 0.1517989872 - - small nuclear ribonucleoprotein, putative [Ricinus communis]

Gene co-expression network

sample Hb_143629_220 Hb_143629_220 Hb_005496_030 Hb_005496_030 Hb_143629_220--Hb_005496_030 Hb_001053_160 Hb_001053_160 Hb_143629_220--Hb_001053_160 Hb_002316_060 Hb_002316_060 Hb_143629_220--Hb_002316_060 Hb_000531_020 Hb_000531_020 Hb_143629_220--Hb_000531_020 Hb_001314_100 Hb_001314_100 Hb_143629_220--Hb_001314_100 Hb_000526_040 Hb_000526_040 Hb_143629_220--Hb_000526_040 Hb_005496_030--Hb_000526_040 Hb_000545_150 Hb_000545_150 Hb_005496_030--Hb_000545_150 Hb_001638_260 Hb_001638_260 Hb_005496_030--Hb_001638_260 Hb_001247_350 Hb_001247_350 Hb_005496_030--Hb_001247_350 Hb_002716_090 Hb_002716_090 Hb_005496_030--Hb_002716_090 Hb_000617_090 Hb_000617_090 Hb_005496_030--Hb_000617_090 Hb_003638_080 Hb_003638_080 Hb_001053_160--Hb_003638_080 Hb_005224_050 Hb_005224_050 Hb_001053_160--Hb_005224_050 Hb_000487_320 Hb_000487_320 Hb_001053_160--Hb_000487_320 Hb_001053_160--Hb_005496_030 Hb_000134_020 Hb_000134_020 Hb_001053_160--Hb_000134_020 Hb_003058_220 Hb_003058_220 Hb_001053_160--Hb_003058_220 Hb_000438_220 Hb_000438_220 Hb_002316_060--Hb_000438_220 Hb_000196_050 Hb_000196_050 Hb_002316_060--Hb_000196_050 Hb_003943_130 Hb_003943_130 Hb_002316_060--Hb_003943_130 Hb_001369_640 Hb_001369_640 Hb_002316_060--Hb_001369_640 Hb_002316_060--Hb_001314_100 Hb_001946_210 Hb_001946_210 Hb_002316_060--Hb_001946_210 Hb_000025_530 Hb_000025_530 Hb_000531_020--Hb_000025_530 Hb_000260_080 Hb_000260_080 Hb_000531_020--Hb_000260_080 Hb_000883_050 Hb_000883_050 Hb_000531_020--Hb_000883_050 Hb_000703_140 Hb_000703_140 Hb_000531_020--Hb_000703_140 Hb_000260_050 Hb_000260_050 Hb_000531_020--Hb_000260_050 Hb_001828_090 Hb_001828_090 Hb_000531_020--Hb_001828_090 Hb_012573_070 Hb_012573_070 Hb_001314_100--Hb_012573_070 Hb_001314_100--Hb_001369_640 Hb_168054_010 Hb_168054_010 Hb_001314_100--Hb_168054_010 Hb_165132_010 Hb_165132_010 Hb_001314_100--Hb_165132_010 Hb_000029_200 Hb_000029_200 Hb_001314_100--Hb_000029_200 Hb_134949_020 Hb_134949_020 Hb_001314_100--Hb_134949_020 Hb_000526_040--Hb_000545_150 Hb_000526_040--Hb_001247_350 Hb_000526_040--Hb_001638_260 Hb_000526_040--Hb_012573_070 Hb_002660_030 Hb_002660_030 Hb_000526_040--Hb_002660_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
455.82 153.424 221.193 95.7289 187.007 661.885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
467.081 1166.75 499.411 68.3345 42.1144

CAGE analysis