Hb_143629_230

Information

Type -
Description -
Location Contig143629: 157545-159503
Sequence    

Annotation

kegg
ID rcu:RCOM_1436820
description ring finger, putative
nr
ID XP_002512585.1
description ring finger, putative [Ricinus communis]
swissprot
ID Q9M9L0
description Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=2
trembl
ID B9RFR6
description Ring finger, putative OS=Ricinus communis GN=RCOM_1436820 PE=4 SV=1
Gene Ontology
ID GO:0005680
description anaphase-promoting complex subunit 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11512: 157546-160589 , PASA_asmbl_11513: 159919-160332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_230 0.0 - - ring finger, putative [Ricinus communis]
2 Hb_000317_340 0.0572230808 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000465_060 0.0631728429 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
4 Hb_000545_150 0.070892373 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
5 Hb_000365_380 0.0787512084 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011781_030 0.079859335 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
7 Hb_004595_020 0.0824688691 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
8 Hb_001584_070 0.082790036 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001117_090 0.084772396 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
10 Hb_012515_010 0.0856387249 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
11 Hb_000340_140 0.0858167718 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
12 Hb_032202_090 0.0866711295 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
13 Hb_000120_750 0.0868145873 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
14 Hb_002685_190 0.0889325141 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
15 Hb_171900_050 0.0895784309 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005997_010 0.0898578844 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
17 Hb_001840_120 0.0911712908 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
18 Hb_001383_060 0.0925484917 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_004108_230 0.0929782025 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
20 Hb_001278_110 0.0932113467 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]

Gene co-expression network

sample Hb_143629_230 Hb_143629_230 Hb_000317_340 Hb_000317_340 Hb_143629_230--Hb_000317_340 Hb_000465_060 Hb_000465_060 Hb_143629_230--Hb_000465_060 Hb_000545_150 Hb_000545_150 Hb_143629_230--Hb_000545_150 Hb_000365_380 Hb_000365_380 Hb_143629_230--Hb_000365_380 Hb_011781_030 Hb_011781_030 Hb_143629_230--Hb_011781_030 Hb_004595_020 Hb_004595_020 Hb_143629_230--Hb_004595_020 Hb_032202_090 Hb_032202_090 Hb_000317_340--Hb_032202_090 Hb_000317_340--Hb_000365_380 Hb_000317_340--Hb_000545_150 Hb_000317_340--Hb_000465_060 Hb_000120_750 Hb_000120_750 Hb_000317_340--Hb_000120_750 Hb_001584_070 Hb_001584_070 Hb_000465_060--Hb_001584_070 Hb_012515_010 Hb_012515_010 Hb_000465_060--Hb_012515_010 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_001824_070 Hb_001824_070 Hb_000465_060--Hb_001824_070 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_012573_070 Hb_012573_070 Hb_000545_150--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_000545_150--Hb_001818_020 Hb_000545_150--Hb_000465_060 Hb_000545_150--Hb_032202_090 Hb_001638_260 Hb_001638_260 Hb_000545_150--Hb_001638_260 Hb_004117_290 Hb_004117_290 Hb_000365_380--Hb_004117_290 Hb_000365_380--Hb_001584_070 Hb_025193_050 Hb_025193_050 Hb_000365_380--Hb_025193_050 Hb_000365_380--Hb_032202_090 Hb_000483_410 Hb_000483_410 Hb_011781_030--Hb_000483_410 Hb_018133_060 Hb_018133_060 Hb_011781_030--Hb_018133_060 Hb_000840_030 Hb_000840_030 Hb_011781_030--Hb_000840_030 Hb_000340_140 Hb_000340_140 Hb_011781_030--Hb_000340_140 Hb_011781_030--Hb_000317_340 Hb_001840_120 Hb_001840_120 Hb_004595_020--Hb_001840_120 Hb_004595_020--Hb_012515_010 Hb_011139_020 Hb_011139_020 Hb_004595_020--Hb_011139_020 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180 Hb_004595_020--Hb_025193_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.4019 5.69847 8.7942 7.54433 19.4034 35.7754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.1268 60.712 22.2039 11.0666 12.2678

CAGE analysis