Hb_143766_010

Information

Type -
Description -
Location Contig143766: 10707-14091
Sequence    

Annotation

kegg
ID tcc:TCM_037705
description Mitochondrial ATP synthase subunit G protein
nr
ID XP_012076794.1
description PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KC18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07317 PE=4 SV=1
Gene Ontology
ID GO:0000276
description mitochondrial atp synthase subunit g protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11549: 10833-14052
cDNA
(Sanger)
(ID:Location)		 050_C11.ab1: 10899-13935

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143766_010 0.0 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
2 Hb_007012_060 0.0742934719 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
3 Hb_004102_070 0.075750532 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
4 Hb_027654_050 0.0764985306 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
5 Hb_010175_040 0.0765443633 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
6 Hb_021596_090 0.0766764745 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
7 Hb_009182_010 0.0771204827 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
8 Hb_018124_010 0.0778141232 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
9 Hb_001396_100 0.0786831687 - - DNA binding protein, putative [Ricinus communis]
10 Hb_001616_040 0.0798758092 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
11 Hb_000417_360 0.0836059125 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
12 Hb_000189_240 0.083869833 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
13 Hb_007441_040 0.0843698337 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
14 Hb_143496_010 0.0862156018 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
15 Hb_001776_160 0.0867555849 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
16 Hb_005181_030 0.0871201887 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_000103_010 0.0875257496 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
18 Hb_000102_020 0.0883518841 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
19 Hb_000668_040 0.089173293 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
20 Hb_017225_020 0.0908322273 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]

Gene co-expression network

sample Hb_143766_010 Hb_143766_010 Hb_007012_060 Hb_007012_060 Hb_143766_010--Hb_007012_060 Hb_004102_070 Hb_004102_070 Hb_143766_010--Hb_004102_070 Hb_027654_050 Hb_027654_050 Hb_143766_010--Hb_027654_050 Hb_010175_040 Hb_010175_040 Hb_143766_010--Hb_010175_040 Hb_021596_090 Hb_021596_090 Hb_143766_010--Hb_021596_090 Hb_009182_010 Hb_009182_010 Hb_143766_010--Hb_009182_010 Hb_094608_010 Hb_094608_010 Hb_007012_060--Hb_094608_010 Hb_007441_040 Hb_007441_040 Hb_007012_060--Hb_007441_040 Hb_000102_020 Hb_000102_020 Hb_007012_060--Hb_000102_020 Hb_005181_030 Hb_005181_030 Hb_007012_060--Hb_005181_030 Hb_002830_020 Hb_002830_020 Hb_007012_060--Hb_002830_020 Hb_000996_140 Hb_000996_140 Hb_004102_070--Hb_000996_140 Hb_001616_040 Hb_001616_040 Hb_004102_070--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_004102_070--Hb_004459_040 Hb_000668_040 Hb_000668_040 Hb_004102_070--Hb_000668_040 Hb_018124_010 Hb_018124_010 Hb_004102_070--Hb_018124_010 Hb_001776_160 Hb_001776_160 Hb_027654_050--Hb_001776_160 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_001512_080 Hb_001512_080 Hb_027654_050--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_027654_050--Hb_002110_200 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_000254_050 Hb_000254_050 Hb_027654_050--Hb_000254_050 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_000920_110 Hb_000920_110 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_010175_040--Hb_001616_040 Hb_000046_100 Hb_000046_100 Hb_021596_090--Hb_000046_100 Hb_007044_120 Hb_007044_120 Hb_021596_090--Hb_007044_120 Hb_000103_320 Hb_000103_320 Hb_021596_090--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_021596_090--Hb_000638_250 Hb_034299_050 Hb_034299_050 Hb_021596_090--Hb_034299_050 Hb_009182_010--Hb_007441_040 Hb_009182_010--Hb_000102_020 Hb_000982_090 Hb_000982_090 Hb_009182_010--Hb_000982_090 Hb_091433_020 Hb_091433_020 Hb_009182_010--Hb_091433_020 Hb_004157_030 Hb_004157_030 Hb_009182_010--Hb_004157_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.6972 8.02532 25.4938 29.4609 18.9626 23.2868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.7177 70.2358 44.7817 31.2184 15.5776

CAGE analysis