Hb_143766_050

Information

Type -
Description -
Location Contig143766: 37877-40536
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07570g
description hypothetical protein
nr
ID XP_011004096.1
description PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
swissprot
ID Q9M0E0
description 40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1
trembl
ID A0A067KNB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07321 PE=3 SV=1
Gene Ontology
ID GO:0005739
description 40s ribosomal protein s15a-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11554: 38021-40440 , PASA_asmbl_11556: 41058-41500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143766_050 0.0 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
2 Hb_019253_030 0.0750039966 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
3 Hb_009686_030 0.0756524584 - - -
4 Hb_003734_140 0.0841606996 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002259_070 0.0881290643 - - taz protein, putative [Ricinus communis]
6 Hb_006031_020 0.0882872723 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
7 Hb_012753_160 0.089023441 - - ara4-interacting protein, putative [Ricinus communis]
8 Hb_156947_010 0.0900126139 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
9 Hb_007416_030 0.0934709374 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
10 Hb_000479_010 0.0938645668 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
11 Hb_001545_140 0.0959436631 transcription factor TF Family: NAC -
12 Hb_004048_110 0.0961430903 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
13 Hb_008878_030 0.0972285758 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
14 Hb_005511_160 0.0982003636 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
15 Hb_011867_010 0.0991347644 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
16 Hb_010672_070 0.1018259342 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
17 Hb_000933_160 0.1018294701 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
18 Hb_002686_020 0.1029800272 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
19 Hb_003050_080 0.1034055354 - - 40S ribosomal protein S14, putative [Ricinus communis]
20 Hb_001292_020 0.1037412539 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]

Gene co-expression network

sample Hb_143766_050 Hb_143766_050 Hb_019253_030 Hb_019253_030 Hb_143766_050--Hb_019253_030 Hb_009686_030 Hb_009686_030 Hb_143766_050--Hb_009686_030 Hb_003734_140 Hb_003734_140 Hb_143766_050--Hb_003734_140 Hb_002259_070 Hb_002259_070 Hb_143766_050--Hb_002259_070 Hb_006031_020 Hb_006031_020 Hb_143766_050--Hb_006031_020 Hb_012753_160 Hb_012753_160 Hb_143766_050--Hb_012753_160 Hb_019253_030--Hb_002259_070 Hb_010261_060 Hb_010261_060 Hb_019253_030--Hb_010261_060 Hb_000574_160 Hb_000574_160 Hb_019253_030--Hb_000574_160 Hb_019253_030--Hb_009686_030 Hb_001540_010 Hb_001540_010 Hb_019253_030--Hb_001540_010 Hb_156947_010 Hb_156947_010 Hb_009686_030--Hb_156947_010 Hb_008878_030 Hb_008878_030 Hb_009686_030--Hb_008878_030 Hb_002686_020 Hb_002686_020 Hb_009686_030--Hb_002686_020 Hb_009686_030--Hb_001540_010 Hb_089839_020 Hb_089839_020 Hb_003734_140--Hb_089839_020 Hb_002925_030 Hb_002925_030 Hb_003734_140--Hb_002925_030 Hb_002713_070 Hb_002713_070 Hb_003734_140--Hb_002713_070 Hb_000227_230 Hb_000227_230 Hb_003734_140--Hb_000227_230 Hb_001505_020 Hb_001505_020 Hb_003734_140--Hb_001505_020 Hb_004375_100 Hb_004375_100 Hb_003734_140--Hb_004375_100 Hb_005511_160 Hb_005511_160 Hb_002259_070--Hb_005511_160 Hb_012753_230 Hb_012753_230 Hb_002259_070--Hb_012753_230 Hb_002259_070--Hb_000574_160 Hb_001780_040 Hb_001780_040 Hb_002259_070--Hb_001780_040 Hb_002259_070--Hb_010261_060 Hb_011867_010 Hb_011867_010 Hb_006031_020--Hb_011867_010 Hb_002226_070 Hb_002226_070 Hb_006031_020--Hb_002226_070 Hb_002183_090 Hb_002183_090 Hb_006031_020--Hb_002183_090 Hb_000059_370 Hb_000059_370 Hb_006031_020--Hb_000059_370 Hb_007416_030 Hb_007416_030 Hb_006031_020--Hb_007416_030 Hb_006031_020--Hb_002686_020 Hb_012675_060 Hb_012675_060 Hb_012753_160--Hb_012675_060 Hb_001140_060 Hb_001140_060 Hb_012753_160--Hb_001140_060 Hb_000072_080 Hb_000072_080 Hb_012753_160--Hb_000072_080 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_012753_160--Hb_000574_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2964 4.23148 9.16539 6.52243 23.105 16.7349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5327 53.2142 27.2644 11.9565 11.3502

CAGE analysis