Hb_143766_080

Information

Type -
Description -
Location Contig143766: 52232-67347
Sequence    

Annotation

kegg
ID rcu:RCOM_1048240
description Mitochondrial-processing peptidase subunit beta, mitochondrial precursor, putative (EC:3.4.24.64)
nr
ID XP_012076806.1
description PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RKC8
description Mitochondrial-processing peptidase subunit beta, mitochondrial, putative OS=Ricinus communis GN=RCOM_1048240 PE=3 SV=1
Gene Ontology
ID GO:0043231
description mitochondrial-processing peptidase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11557: 56284-57222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143766_080 0.0 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
2 Hb_001754_050 0.0740815858 - - protein arginine n-methyltransferase, putative [Ricinus communis]
3 Hb_003710_020 0.0926570204 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
4 Hb_004129_010 0.114279569 - - aspartate aminotransferase, putative [Ricinus communis]
5 Hb_004522_030 0.1201689943 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
6 Hb_000116_240 0.1213448053 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
7 Hb_004883_020 0.1248555092 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
8 Hb_003030_010 0.1251455293 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
9 Hb_012760_090 0.1258184405 - - Aspartic proteinase-like protein 1 [Morus notabilis]
10 Hb_080477_080 0.1259808492 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
11 Hb_172706_020 0.1264286732 - - PREDICTED: protein ABIL2 [Jatropha curcas]
12 Hb_034507_060 0.1295630147 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
13 Hb_000392_250 0.1298426538 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
14 Hb_005333_080 0.1306204933 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010672_050 0.130927316 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
16 Hb_007575_030 0.1367674468 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
17 Hb_004218_130 0.1374984577 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
18 Hb_007537_030 0.1376558532 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
19 Hb_000928_120 0.1400212253 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
20 Hb_001277_400 0.1404032762 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_143766_080 Hb_143766_080 Hb_001754_050 Hb_001754_050 Hb_143766_080--Hb_001754_050 Hb_003710_020 Hb_003710_020 Hb_143766_080--Hb_003710_020 Hb_004129_010 Hb_004129_010 Hb_143766_080--Hb_004129_010 Hb_004522_030 Hb_004522_030 Hb_143766_080--Hb_004522_030 Hb_000116_240 Hb_000116_240 Hb_143766_080--Hb_000116_240 Hb_004883_020 Hb_004883_020 Hb_143766_080--Hb_004883_020 Hb_001754_050--Hb_004129_010 Hb_000392_250 Hb_000392_250 Hb_001754_050--Hb_000392_250 Hb_001754_050--Hb_004883_020 Hb_000057_130 Hb_000057_130 Hb_001754_050--Hb_000057_130 Hb_004218_130 Hb_004218_130 Hb_001754_050--Hb_004218_130 Hb_080477_080 Hb_080477_080 Hb_003710_020--Hb_080477_080 Hb_000062_530 Hb_000062_530 Hb_003710_020--Hb_000062_530 Hb_034507_060 Hb_034507_060 Hb_003710_020--Hb_034507_060 Hb_001545_130 Hb_001545_130 Hb_003710_020--Hb_001545_130 Hb_003710_020--Hb_004522_030 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_007229_050 Hb_007229_050 Hb_004129_010--Hb_007229_050 Hb_000256_160 Hb_000256_160 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010 Hb_000928_120 Hb_000928_120 Hb_004522_030--Hb_000928_120 Hb_010050_020 Hb_010050_020 Hb_004522_030--Hb_010050_020 Hb_007537_030 Hb_007537_030 Hb_004522_030--Hb_007537_030 Hb_000622_330 Hb_000622_330 Hb_004522_030--Hb_000622_330 Hb_003001_130 Hb_003001_130 Hb_004522_030--Hb_003001_130 Hb_004522_030--Hb_034507_060 Hb_005485_070 Hb_005485_070 Hb_000116_240--Hb_005485_070 Hb_000309_030 Hb_000309_030 Hb_000116_240--Hb_000309_030 Hb_000590_070 Hb_000590_070 Hb_000116_240--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_000116_240--Hb_001277_400 Hb_000261_310 Hb_000261_310 Hb_000116_240--Hb_000261_310 Hb_000318_170 Hb_000318_170 Hb_000116_240--Hb_000318_170 Hb_007575_030 Hb_007575_030 Hb_004883_020--Hb_007575_030 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0657657 0.766578 1.2282 1.89488 0.0277247 0.168662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146134 0.293872 0.219561 1.34383 0.897772

CAGE analysis