Hb_143766_090

Information

Type -
Description -
Location Contig143766: 68847-70634
Sequence    

Annotation

kegg
ID sot:102583424
description 60S ribosomal protein L31-like
nr
ID ADR71261.1
description 60S ribosomal protein L31B [Hevea brasiliensis]
swissprot
ID Q9M573
description 60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1
trembl
ID I3NMM4
description 60S ribosomal protein L31B OS=Hevea brasiliensis GN=RPL31B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11558: 68847-70630
cDNA
(Sanger)
(ID:Location)		 004_L01.ab1: 68842-70517 , 004_O24.ab1: 68854-70522 , 008_I23.ab1: 68847-70515 , 019_M11.ab1: 68842-70505 , 020_K04.ab1: 68842-70505 , 026_J03.ab1: 68847-70516 , 030_O18.ab1: 68847-70515 , 045_K10.ab1: 68847-70515

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143766_090 0.0 - - 60S ribosomal protein L31B [Hevea brasiliensis]
2 Hb_001514_020 0.063455147 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
3 Hb_006501_150 0.0668713761 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003688_100 0.079578164 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
5 Hb_000141_060 0.0845528943 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
6 Hb_005527_050 0.0849439109 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
7 Hb_001405_050 0.0852781262 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
8 Hb_004502_030 0.0853634452 - - unknown [Populus trichocarpa]
9 Hb_000847_070 0.0860504077 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
10 Hb_012675_090 0.0867124499 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
11 Hb_005535_050 0.086979521 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
12 Hb_000976_270 0.0877611374 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
13 Hb_019962_030 0.0884136636 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
14 Hb_005843_110 0.0908240138 - - Caltractin, putative [Ricinus communis]
15 Hb_001369_650 0.0916711959 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
16 Hb_010128_130 0.0925231993 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
17 Hb_000538_020 0.0926538286 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
18 Hb_010449_020 0.0931860868 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
19 Hb_006816_500 0.093582627 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
20 Hb_000107_390 0.0948917199 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]

Gene co-expression network

sample Hb_143766_090 Hb_143766_090 Hb_001514_020 Hb_001514_020 Hb_143766_090--Hb_001514_020 Hb_006501_150 Hb_006501_150 Hb_143766_090--Hb_006501_150 Hb_003688_100 Hb_003688_100 Hb_143766_090--Hb_003688_100 Hb_000141_060 Hb_000141_060 Hb_143766_090--Hb_000141_060 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001405_050 Hb_001405_050 Hb_143766_090--Hb_001405_050 Hb_001514_020--Hb_003688_100 Hb_000847_070 Hb_000847_070 Hb_001514_020--Hb_000847_070 Hb_004502_030 Hb_004502_030 Hb_001514_020--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_006501_150--Hb_001514_020 Hb_005333_040 Hb_005333_040 Hb_006501_150--Hb_005333_040 Hb_006501_150--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006501_150--Hb_033080_010 Hb_000183_070 Hb_000183_070 Hb_006501_150--Hb_000183_070 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_004722_060 Hb_004722_060 Hb_003688_100--Hb_004722_060 Hb_010449_020 Hb_010449_020 Hb_003688_100--Hb_010449_020 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_005489_130 Hb_005489_130 Hb_003688_100--Hb_005489_130 Hb_000666_110 Hb_000666_110 Hb_000141_060--Hb_000666_110 Hb_143629_010 Hb_143629_010 Hb_000141_060--Hb_143629_010 Hb_019962_030 Hb_019962_030 Hb_000141_060--Hb_019962_030 Hb_171900_100 Hb_171900_100 Hb_000141_060--Hb_171900_100 Hb_000141_060--Hb_011794_090 Hb_003728_020 Hb_003728_020 Hb_005527_050--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_005527_050--Hb_003453_020 Hb_002272_250 Hb_002272_250 Hb_005527_050--Hb_002272_250 Hb_005928_060 Hb_005928_060 Hb_005527_050--Hb_005928_060 Hb_000905_190 Hb_000905_190 Hb_005527_050--Hb_000905_190 Hb_150069_020 Hb_150069_020 Hb_005527_050--Hb_150069_020 Hb_001776_090 Hb_001776_090 Hb_001405_050--Hb_001776_090 Hb_001405_050--Hb_019962_030 Hb_002681_040 Hb_002681_040 Hb_001405_050--Hb_002681_040 Hb_004204_070 Hb_004204_070 Hb_001405_050--Hb_004204_070 Hb_000538_020 Hb_000538_020 Hb_001405_050--Hb_000538_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1384.12 320.427 373.104 97.8215 1268.03 1055.73
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
864.588 1109.25 465.623 285.99 120.679

CAGE analysis