Hb_143800_010

Information

Type -
Description -
Location Contig143800: 4936-6347
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21410g
description hypothetical protein
nr
ID XP_006378723.1
description hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
swissprot
ID C7J4U3
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Oryza sativa subsp. japonica GN=OST4A PE=3 SV=1
trembl
ID F6HLE1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g00090 PE=4 SV=1
Gene Ontology
ID GO:0005789
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143800_010 0.0 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
2 Hb_063480_010 0.1685756863 - - PREDICTED: endoribonuclease Dicer homolog 1-like isoform X2 [Pyrus x bretschneideri]
3 Hb_000415_070 0.2241860318 - - -
4 Hb_151939_010 0.2317932847 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
5 Hb_000640_110 0.2569472588 - - -
6 Hb_000136_180 0.2936905324 - - ribosomal protein S28, putative [Ricinus communis]
7 Hb_005542_090 0.2957498387 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
8 Hb_002291_040 0.3000702022 - - hypothetical protein VITISV_030841 [Vitis vinifera]
9 Hb_012094_030 0.3025438535 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
10 Hb_001517_030 0.3038403375 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005597_010 0.3059569356 - - -
12 Hb_002368_090 0.3079744554 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
13 Hb_003695_010 0.3086128806 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
14 Hb_116632_010 0.3112701415 - - unnamed protein product [Vitis vinifera]
15 Hb_000084_130 0.3144031604 - - -
16 Hb_041025_010 0.3170004675 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
17 Hb_172572_010 0.3175771976 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
18 Hb_032258_020 0.3185177382 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
19 Hb_015026_150 0.3219831704 - - Nuclease PA3, putative [Ricinus communis]
20 Hb_094437_010 0.324719869 - - -

Gene co-expression network

sample Hb_143800_010 Hb_143800_010 Hb_063480_010 Hb_063480_010 Hb_143800_010--Hb_063480_010 Hb_000415_070 Hb_000415_070 Hb_143800_010--Hb_000415_070 Hb_151939_010 Hb_151939_010 Hb_143800_010--Hb_151939_010 Hb_000640_110 Hb_000640_110 Hb_143800_010--Hb_000640_110 Hb_000136_180 Hb_000136_180 Hb_143800_010--Hb_000136_180 Hb_005542_090 Hb_005542_090 Hb_143800_010--Hb_005542_090 Hb_063480_010--Hb_151939_010 Hb_025048_020 Hb_025048_020 Hb_063480_010--Hb_025048_020 Hb_094437_010 Hb_094437_010 Hb_063480_010--Hb_094437_010 Hb_063480_010--Hb_000136_180 Hb_063480_010--Hb_000415_070 Hb_001517_030 Hb_001517_030 Hb_000415_070--Hb_001517_030 Hb_000415_070--Hb_005542_090 Hb_017462_010 Hb_017462_010 Hb_000415_070--Hb_017462_010 Hb_015026_150 Hb_015026_150 Hb_000415_070--Hb_015026_150 Hb_000415_070--Hb_000136_180 Hb_002291_040 Hb_002291_040 Hb_151939_010--Hb_002291_040 Hb_003925_030 Hb_003925_030 Hb_151939_010--Hb_003925_030 Hb_151939_010--Hb_005542_090 Hb_088428_010 Hb_088428_010 Hb_151939_010--Hb_088428_010 Hb_005597_010 Hb_005597_010 Hb_000640_110--Hb_005597_010 Hb_004242_210 Hb_004242_210 Hb_000640_110--Hb_004242_210 Hb_030885_020 Hb_030885_020 Hb_000640_110--Hb_030885_020 Hb_000640_110--Hb_000415_070 Hb_130067_010 Hb_130067_010 Hb_000640_110--Hb_130067_010 Hb_007188_020 Hb_007188_020 Hb_000136_180--Hb_007188_020 Hb_002687_080 Hb_002687_080 Hb_000136_180--Hb_002687_080 Hb_112047_010 Hb_112047_010 Hb_000136_180--Hb_112047_010 Hb_000015_070 Hb_000015_070 Hb_000136_180--Hb_000015_070 Hb_076875_020 Hb_076875_020 Hb_000136_180--Hb_076875_020 Hb_001623_290 Hb_001623_290 Hb_000136_180--Hb_001623_290 Hb_179812_010 Hb_179812_010 Hb_005542_090--Hb_179812_010 Hb_007083_020 Hb_007083_020 Hb_005542_090--Hb_007083_020 Hb_010504_030 Hb_010504_030 Hb_005542_090--Hb_010504_030 Hb_000261_360 Hb_000261_360 Hb_005542_090--Hb_000261_360 Hb_003581_010 Hb_003581_010 Hb_005542_090--Hb_003581_010 Hb_000007_460 Hb_000007_460 Hb_005542_090--Hb_000007_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0659266 0 0.0510754 0.248788 0 0.416272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.121798 0 0.102192 0

CAGE analysis