Hb_143813_010

Information

Type -
Description -
Location Contig143813: 7363-9653
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02860g
description POPTRDRAFT_1096347; 60S ribosomal protein L13
nr
ID XP_010243468.1
description PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
swissprot
ID P41128
description 60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1
trembl
ID A0A067L2X8
description 60S ribosomal protein L13 OS=Jatropha curcas GN=JCGZ_05012 PE=3 SV=1
Gene Ontology
ID GO:0030529
description 60s ribosomal protein l13-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11563: 7352-9033 , PASA_asmbl_11564: 8451-8554
cDNA
(Sanger)
(ID:Location)		 041_A15.ab1: 7352-9033

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143813_010 0.0 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
2 Hb_007747_090 0.0648058904 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
3 Hb_000510_090 0.0710044107 - - 40S ribosomal protein S15 [Morus notabilis]
4 Hb_001246_100 0.0827416605 - - Ras-related small GTP-binding family protein [Theobroma cacao]
5 Hb_003120_060 0.084573175 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
6 Hb_000019_230 0.0855495799 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
7 Hb_001221_230 0.086551439 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000099_240 0.0876049959 - - 60S ribosomal protein L7a, putative [Ricinus communis]
9 Hb_000317_430 0.0876881648 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
10 Hb_003038_030 0.0886282266 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
11 Hb_004195_160 0.0891721293 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
12 Hb_001477_110 0.0896983503 - - prohibitin, putative [Ricinus communis]
13 Hb_002307_030 0.0901113647 - - 40S ribosomal protein S15D [Hevea brasiliensis]
14 Hb_000156_130 0.0909267097 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
15 Hb_002659_070 0.0923169521 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
16 Hb_000045_130 0.0924435117 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
17 Hb_118419_020 0.0933739966 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
18 Hb_007193_100 0.0941795452 - - syntaxin family protein [Populus trichocarpa]
19 Hb_002311_350 0.0956342346 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
20 Hb_000923_020 0.0958022698 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]

Gene co-expression network

sample Hb_143813_010 Hb_143813_010 Hb_007747_090 Hb_007747_090 Hb_143813_010--Hb_007747_090 Hb_000510_090 Hb_000510_090 Hb_143813_010--Hb_000510_090 Hb_001246_100 Hb_001246_100 Hb_143813_010--Hb_001246_100 Hb_003120_060 Hb_003120_060 Hb_143813_010--Hb_003120_060 Hb_000019_230 Hb_000019_230 Hb_143813_010--Hb_000019_230 Hb_001221_230 Hb_001221_230 Hb_143813_010--Hb_001221_230 Hb_000260_050 Hb_000260_050 Hb_007747_090--Hb_000260_050 Hb_000318_380 Hb_000318_380 Hb_007747_090--Hb_000318_380 Hb_000045_130 Hb_000045_130 Hb_007747_090--Hb_000045_130 Hb_001369_650 Hb_001369_650 Hb_007747_090--Hb_001369_650 Hb_000977_080 Hb_000977_080 Hb_007747_090--Hb_000977_080 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_155375_010 Hb_155375_010 Hb_000510_090--Hb_155375_010 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_006447_010 Hb_006447_010 Hb_001246_100--Hb_006447_010 Hb_001454_140 Hb_001454_140 Hb_001246_100--Hb_001454_140 Hb_007193_100 Hb_007193_100 Hb_001246_100--Hb_007193_100 Hb_000386_040 Hb_000386_040 Hb_001246_100--Hb_000386_040 Hb_000175_070 Hb_000175_070 Hb_001246_100--Hb_000175_070 Hb_003120_060--Hb_000019_230 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_000188_100 Hb_000188_100 Hb_003120_060--Hb_000188_100 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003038_030 Hb_003038_030 Hb_003120_060--Hb_003038_030 Hb_003551_020 Hb_003551_020 Hb_000019_230--Hb_003551_020 Hb_000019_230--Hb_003038_030 Hb_000019_230--Hb_000188_100 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_000035_380 Hb_000035_380 Hb_001221_230--Hb_000035_380 Hb_000317_430 Hb_000317_430 Hb_001221_230--Hb_000317_430 Hb_010128_130 Hb_010128_130 Hb_001221_230--Hb_010128_130 Hb_000032_570 Hb_000032_570 Hb_001221_230--Hb_000032_570 Hb_001221_230--Hb_001214_130 Hb_001741_140 Hb_001741_140 Hb_001221_230--Hb_001741_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
170.37 73.1198 34.8876 64.6196 186.047 312.081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
156.378 282.239 154.81 84.8703 24.5942

CAGE analysis