Hb_143813_020

Information

Type transcription factor
Description TF Family: WRKY
Location Contig143813: 18559-20352
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10950g
description POPTRDRAFT_653213; hypothetical protein
nr
ID XP_002309186.2
description hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
swissprot
ID Q9LY00
description Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1
trembl
ID B9HDJ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10950g PE=4 SV=2
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11565: 18395-20406
cDNA
(Sanger)
(ID:Location)		 020_P08.ab1: 18834-20406

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143813_020 0.0 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
2 Hb_004155_020 0.1326929396 transcription factor TF Family: MYB myb, putative [Ricinus communis]
3 Hb_000684_100 0.1338635375 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
4 Hb_001863_160 0.1364715519 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
5 Hb_001369_470 0.1400794395 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
6 Hb_001214_190 0.14290285 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
7 Hb_005903_020 0.1446399816 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
8 Hb_000098_150 0.1449128448 - - DNA helicase hus2, putative [Ricinus communis]
9 Hb_007426_220 0.1450333292 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
10 Hb_005901_030 0.153539686 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
11 Hb_005144_210 0.1537623534 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000818_120 0.1560549326 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004193_010 0.1561730497 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
14 Hb_003549_130 0.1581135423 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_004957_020 0.1592029605 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000979_060 0.159219986 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
17 Hb_000009_220 0.1598694675 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
18 Hb_004108_210 0.1625025481 - - phenazine biosynthesis protein, putative [Ricinus communis]
19 Hb_000883_170 0.1627866913 - - senescence-associated family protein [Populus trichocarpa]
20 Hb_010080_010 0.1645544022 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]

Gene co-expression network

sample Hb_143813_020 Hb_143813_020 Hb_004155_020 Hb_004155_020 Hb_143813_020--Hb_004155_020 Hb_000684_100 Hb_000684_100 Hb_143813_020--Hb_000684_100 Hb_001863_160 Hb_001863_160 Hb_143813_020--Hb_001863_160 Hb_001369_470 Hb_001369_470 Hb_143813_020--Hb_001369_470 Hb_001214_190 Hb_001214_190 Hb_143813_020--Hb_001214_190 Hb_005903_020 Hb_005903_020 Hb_143813_020--Hb_005903_020 Hb_001232_090 Hb_001232_090 Hb_004155_020--Hb_001232_090 Hb_005901_030 Hb_005901_030 Hb_004155_020--Hb_005901_030 Hb_000526_010 Hb_000526_010 Hb_004155_020--Hb_000526_010 Hb_000260_650 Hb_000260_650 Hb_004155_020--Hb_000260_650 Hb_000563_440 Hb_000563_440 Hb_004155_020--Hb_000563_440 Hb_000979_060 Hb_000979_060 Hb_000684_100--Hb_000979_060 Hb_004125_060 Hb_004125_060 Hb_000684_100--Hb_004125_060 Hb_000009_220 Hb_000009_220 Hb_000684_100--Hb_000009_220 Hb_001369_030 Hb_001369_030 Hb_000684_100--Hb_001369_030 Hb_000086_430 Hb_000086_430 Hb_000684_100--Hb_000086_430 Hb_000062_360 Hb_000062_360 Hb_000684_100--Hb_000062_360 Hb_000098_150 Hb_000098_150 Hb_001863_160--Hb_000098_150 Hb_014231_020 Hb_014231_020 Hb_001863_160--Hb_014231_020 Hb_005144_210 Hb_005144_210 Hb_001863_160--Hb_005144_210 Hb_004712_190 Hb_004712_190 Hb_001863_160--Hb_004712_190 Hb_007741_130 Hb_007741_130 Hb_001863_160--Hb_007741_130 Hb_001191_080 Hb_001191_080 Hb_001863_160--Hb_001191_080 Hb_001369_470--Hb_005144_210 Hb_004108_210 Hb_004108_210 Hb_001369_470--Hb_004108_210 Hb_001369_470--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_001369_470--Hb_001221_580 Hb_161568_010 Hb_161568_010 Hb_001369_470--Hb_161568_010 Hb_001369_470--Hb_005903_020 Hb_004449_140 Hb_004449_140 Hb_001214_190--Hb_004449_140 Hb_000185_230 Hb_000185_230 Hb_001214_190--Hb_000185_230 Hb_124951_010 Hb_124951_010 Hb_001214_190--Hb_124951_010 Hb_003430_040 Hb_003430_040 Hb_001214_190--Hb_003430_040 Hb_001214_190--Hb_000684_100 Hb_006438_020 Hb_006438_020 Hb_005903_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_005903_020--Hb_007426_220 Hb_005903_020--Hb_001232_090 Hb_011716_010 Hb_011716_010 Hb_005903_020--Hb_011716_010 Hb_005903_020--Hb_004108_210 Hb_000926_060 Hb_000926_060 Hb_005903_020--Hb_000926_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91707 4.84381 15.5821 4.76016 1.70048 0.651765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.45891 1.7211 3.53978 3.44608 1.84132

CAGE analysis