Hb_143947_010

Information

Type -
Description -
Location Contig143947: 21-676
Sequence    

Annotation

kegg
ID tcc:TCM_015907
description PPPDE thiol peptidase family protein, putative
nr
ID XP_009369198.1
description PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID A0A061GB44
description PPPDE thiol peptidase family protein, putative OS=Theobroma cacao GN=TCM_015907 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143947_010 0.0 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
2 Hb_001818_080 0.1082860243 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
3 Hb_000703_090 0.1097512716 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
4 Hb_003494_240 0.1168001063 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
5 Hb_001976_050 0.1187246576 - - PREDICTED: protein SKIP34 [Jatropha curcas]
6 Hb_010298_010 0.1223368559 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
7 Hb_000035_130 0.1226783655 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
8 Hb_002259_030 0.1239633979 - - conserved hypothetical protein [Ricinus communis]
9 Hb_030312_040 0.125136792 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
10 Hb_024714_030 0.1297537709 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
11 Hb_002215_050 0.129828726 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
12 Hb_000977_310 0.1300575437 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
13 Hb_000347_150 0.1323900723 - - Nucleolysin TIAR [Morus notabilis]
14 Hb_001454_140 0.1344129695 - - protein arginine n-methyltransferase, putative [Ricinus communis]
15 Hb_006740_020 0.1354518411 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
16 Hb_001369_060 0.1357209072 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
17 Hb_004374_200 0.1358828278 - - putative GMP synthase [Oxybasis rubra]
18 Hb_000620_080 0.1381246 - - hypothetical protein F775_32679 [Aegilops tauschii]
19 Hb_000442_160 0.1386835449 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
20 Hb_001246_100 0.1386948887 - - Ras-related small GTP-binding family protein [Theobroma cacao]

Gene co-expression network

sample Hb_143947_010 Hb_143947_010 Hb_001818_080 Hb_001818_080 Hb_143947_010--Hb_001818_080 Hb_000703_090 Hb_000703_090 Hb_143947_010--Hb_000703_090 Hb_003494_240 Hb_003494_240 Hb_143947_010--Hb_003494_240 Hb_001976_050 Hb_001976_050 Hb_143947_010--Hb_001976_050 Hb_010298_010 Hb_010298_010 Hb_143947_010--Hb_010298_010 Hb_000035_130 Hb_000035_130 Hb_143947_010--Hb_000035_130 Hb_030312_040 Hb_030312_040 Hb_001818_080--Hb_030312_040 Hb_061908_010 Hb_061908_010 Hb_001818_080--Hb_061908_010 Hb_002232_170 Hb_002232_170 Hb_001818_080--Hb_002232_170 Hb_004374_200 Hb_004374_200 Hb_001818_080--Hb_004374_200 Hb_005565_030 Hb_005565_030 Hb_001818_080--Hb_005565_030 Hb_015941_030 Hb_015941_030 Hb_001818_080--Hb_015941_030 Hb_000703_090--Hb_003494_240 Hb_002215_050 Hb_002215_050 Hb_000703_090--Hb_002215_050 Hb_000703_090--Hb_015941_030 Hb_001124_210 Hb_001124_210 Hb_000703_090--Hb_001124_210 Hb_024714_030 Hb_024714_030 Hb_000703_090--Hb_024714_030 Hb_000386_040 Hb_000386_040 Hb_000703_090--Hb_000386_040 Hb_001454_060 Hb_001454_060 Hb_003494_240--Hb_001454_060 Hb_000608_120 Hb_000608_120 Hb_003494_240--Hb_000608_120 Hb_003494_240--Hb_002215_050 Hb_003494_240--Hb_030312_040 Hb_003638_140 Hb_003638_140 Hb_003494_240--Hb_003638_140 Hb_155375_010 Hb_155375_010 Hb_001976_050--Hb_155375_010 Hb_000032_540 Hb_000032_540 Hb_001976_050--Hb_000032_540 Hb_000510_090 Hb_000510_090 Hb_001976_050--Hb_000510_090 Hb_000705_220 Hb_000705_220 Hb_001976_050--Hb_000705_220 Hb_002259_030 Hb_002259_030 Hb_001976_050--Hb_002259_030 Hb_000671_100 Hb_000671_100 Hb_010298_010--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_010298_010--Hb_010261_020 Hb_010298_010--Hb_024714_030 Hb_033642_020 Hb_033642_020 Hb_010298_010--Hb_033642_020 Hb_000977_310 Hb_000977_310 Hb_010298_010--Hb_000977_310 Hb_000307_200 Hb_000307_200 Hb_010298_010--Hb_000307_200 Hb_073339_010 Hb_073339_010 Hb_000035_130--Hb_073339_010 Hb_006723_020 Hb_006723_020 Hb_000035_130--Hb_006723_020 Hb_000035_120 Hb_000035_120 Hb_000035_130--Hb_000035_120 Hb_000538_080 Hb_000538_080 Hb_000035_130--Hb_000538_080 Hb_000878_130 Hb_000878_130 Hb_000035_130--Hb_000878_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
216.933 150.547 37.5845 76.6763 175.88 540.247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
267.996 188.422 163.361 37.8581 14.1428

CAGE analysis