Hb_144004_010

Information

Type -
Description -
Location Contig144004: 4648-7195
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37340g
description POPTRDRAFT_798148; ABC transporter family protein
nr
ID KDP39252.1
description hypothetical protein JCGZ_01009 [Jatropha curcas]
swissprot
ID Q9LK64
description ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1
trembl
ID A0A067KT12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01009 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144004_010 0.0 - - hypothetical protein JCGZ_01009 [Jatropha curcas]
2 Hb_005389_190 0.2002862923 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_000363_470 0.2441963143 - - hypothetical protein JCGZ_00950 [Jatropha curcas]
4 Hb_003517_010 0.2449109592 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
5 Hb_112203_010 0.2457349184 - - -
6 Hb_001675_230 0.2460157079 - - scab resistance family protein [Populus trichocarpa]
7 Hb_000666_020 0.2465137954 - - Major latex protein, putative [Ricinus communis]
8 Hb_000177_120 0.2469250653 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
9 Hb_020581_020 0.2480628094 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
10 Hb_137695_010 0.2501475026 - - PREDICTED: wall-associated receptor kinase 2-like [Malus domestica]
11 Hb_181968_010 0.2540644446 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
12 Hb_046994_010 0.2581022671 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_000046_060 0.2635884591 - - sugar transporter, putative [Ricinus communis]
14 Hb_000160_100 0.2649631638 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
15 Hb_125644_010 0.2651137349 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
16 Hb_000575_110 0.2654475784 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
17 Hb_002837_140 0.2665525278 - - hypothetical protein JCGZ_05022 [Jatropha curcas]
18 Hb_000101_360 0.2685051092 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
19 Hb_015227_010 0.2696803026 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
20 Hb_041184_010 0.2700535376 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_144004_010 Hb_144004_010 Hb_005389_190 Hb_005389_190 Hb_144004_010--Hb_005389_190 Hb_000363_470 Hb_000363_470 Hb_144004_010--Hb_000363_470 Hb_003517_010 Hb_003517_010 Hb_144004_010--Hb_003517_010 Hb_112203_010 Hb_112203_010 Hb_144004_010--Hb_112203_010 Hb_001675_230 Hb_001675_230 Hb_144004_010--Hb_001675_230 Hb_000666_020 Hb_000666_020 Hb_144004_010--Hb_000666_020 Hb_005389_190--Hb_112203_010 Hb_005389_190--Hb_003517_010 Hb_004143_120 Hb_004143_120 Hb_005389_190--Hb_004143_120 Hb_000343_100 Hb_000343_100 Hb_005389_190--Hb_000343_100 Hb_002006_140 Hb_002006_140 Hb_005389_190--Hb_002006_140 Hb_001225_060 Hb_001225_060 Hb_000363_470--Hb_001225_060 Hb_020581_050 Hb_020581_050 Hb_000363_470--Hb_020581_050 Hb_020581_020 Hb_020581_020 Hb_000363_470--Hb_020581_020 Hb_181968_010 Hb_181968_010 Hb_000363_470--Hb_181968_010 Hb_137695_010 Hb_137695_010 Hb_000363_470--Hb_137695_010 Hb_008749_090 Hb_008749_090 Hb_003517_010--Hb_008749_090 Hb_149515_010 Hb_149515_010 Hb_003517_010--Hb_149515_010 Hb_000816_020 Hb_000816_020 Hb_003517_010--Hb_000816_020 Hb_006096_020 Hb_006096_020 Hb_003517_010--Hb_006096_020 Hb_029904_010 Hb_029904_010 Hb_003517_010--Hb_029904_010 Hb_008692_010 Hb_008692_010 Hb_112203_010--Hb_008692_010 Hb_001504_220 Hb_001504_220 Hb_112203_010--Hb_001504_220 Hb_025526_010 Hb_025526_010 Hb_112203_010--Hb_025526_010 Hb_112203_010--Hb_006096_020 Hb_056101_010 Hb_056101_010 Hb_112203_010--Hb_056101_010 Hb_008080_050 Hb_008080_050 Hb_001675_230--Hb_008080_050 Hb_114025_010 Hb_114025_010 Hb_001675_230--Hb_114025_010 Hb_006120_020 Hb_006120_020 Hb_001675_230--Hb_006120_020 Hb_011282_070 Hb_011282_070 Hb_001675_230--Hb_011282_070 Hb_000422_020 Hb_000422_020 Hb_001675_230--Hb_000422_020 Hb_000575_110 Hb_000575_110 Hb_001675_230--Hb_000575_110 Hb_000666_020--Hb_137695_010 Hb_002837_140 Hb_002837_140 Hb_000666_020--Hb_002837_140 Hb_115007_010 Hb_115007_010 Hb_000666_020--Hb_115007_010 Hb_000046_060 Hb_000046_060 Hb_000666_020--Hb_000046_060 Hb_015227_010 Hb_015227_010 Hb_000666_020--Hb_015227_010 Hb_000666_020--Hb_011282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0924203 0.00783444 0 0.0105684 0.0204336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0239922 0 0.0357427 0.518489 0.119484

CAGE analysis