Hb_144045_010

Information

Type transcription factor
Description TF Family: B3
Location Contig144045: 38399-39688
Sequence    

Annotation

kegg
ID rcu:RCOM_1314720
description transcription factor, putative
nr
ID XP_012086558.1
description PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
swissprot
ID O82799
description B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=1 SV=1
trembl
ID A0A067JMG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20332 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing transcription factor nga1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144045_010 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
2 Hb_000042_310 0.0889162816 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
3 Hb_003299_060 0.0962734735 - - nitrate transporter, putative [Ricinus communis]
4 Hb_015824_010 0.0985177125 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
5 Hb_004374_100 0.1073382998 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
6 Hb_000280_030 0.1166861471 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
7 Hb_001691_170 0.1232587611 - - PREDICTED: callose synthase 12-like [Glycine max]
8 Hb_007426_070 0.1304276 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
9 Hb_003302_010 0.1309178104 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
10 Hb_001587_050 0.131675642 - - -
11 Hb_000027_110 0.1344479032 - - wall-associated kinase, putative [Ricinus communis]
12 Hb_000638_270 0.1344669999 - - -
13 Hb_004407_030 0.1365474387 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
14 Hb_000483_440 0.1443944575 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004146_030 0.148348338 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_168319_040 0.1499012024 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
17 Hb_000081_110 0.1505105496 - - nitrate transporter, putative [Ricinus communis]
18 Hb_000644_010 0.1536238989 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
19 Hb_080033_020 0.1543609279 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
20 Hb_000441_080 0.1552803574 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_144045_010 Hb_144045_010 Hb_000042_310 Hb_000042_310 Hb_144045_010--Hb_000042_310 Hb_003299_060 Hb_003299_060 Hb_144045_010--Hb_003299_060 Hb_015824_010 Hb_015824_010 Hb_144045_010--Hb_015824_010 Hb_004374_100 Hb_004374_100 Hb_144045_010--Hb_004374_100 Hb_000280_030 Hb_000280_030 Hb_144045_010--Hb_000280_030 Hb_001691_170 Hb_001691_170 Hb_144045_010--Hb_001691_170 Hb_000042_310--Hb_004374_100 Hb_000042_310--Hb_000280_030 Hb_000042_310--Hb_015824_010 Hb_000638_270 Hb_000638_270 Hb_000042_310--Hb_000638_270 Hb_000705_010 Hb_000705_010 Hb_000042_310--Hb_000705_010 Hb_000027_110 Hb_000027_110 Hb_003299_060--Hb_000027_110 Hb_000668_180 Hb_000668_180 Hb_003299_060--Hb_000668_180 Hb_000334_010 Hb_000334_010 Hb_003299_060--Hb_000334_010 Hb_003299_060--Hb_015824_010 Hb_000116_090 Hb_000116_090 Hb_003299_060--Hb_000116_090 Hb_015824_010--Hb_004374_100 Hb_015824_010--Hb_000280_030 Hb_015824_010--Hb_000027_110 Hb_000207_160 Hb_000207_160 Hb_015824_010--Hb_000207_160 Hb_004374_100--Hb_000280_030 Hb_004374_100--Hb_000638_270 Hb_004374_100--Hb_000705_010 Hb_000280_030--Hb_000638_270 Hb_000280_030--Hb_000705_010 Hb_002025_220 Hb_002025_220 Hb_000280_030--Hb_002025_220 Hb_007426_070 Hb_007426_070 Hb_001691_170--Hb_007426_070 Hb_168319_040 Hb_168319_040 Hb_001691_170--Hb_168319_040 Hb_000483_440 Hb_000483_440 Hb_001691_170--Hb_000483_440 Hb_000081_110 Hb_000081_110 Hb_001691_170--Hb_000081_110 Hb_001517_060 Hb_001517_060 Hb_001691_170--Hb_001517_060 Hb_000017_210 Hb_000017_210 Hb_001691_170--Hb_000017_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.56641 3.75268 0.46498 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.808472 9.97853

CAGE analysis