Hb_144598_020

Information

Type -
Description -
Location Contig144598: 15683-18837
Sequence    

Annotation

kegg
ID rcu:RCOM_0934630
description adenylate cyclase, putative
nr
ID XP_012081144.1
description PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
swissprot
ID Q9SIY3
description Triphosphate tunel metalloenzyme 3 OS=Arabidopsis thaliana GN=TTM3 PE=1 SV=1
trembl
ID A0A067K5E3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16995 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11669: 15770-16950 , PASA_asmbl_11670: 15985-18899
cDNA
(Sanger)
(ID:Location)		 007_D12.ab1: 15770-16527 , 014_K09.ab1: 15770-16355 , 015_D12.ab1: 15770-16476

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144598_020 0.0 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
2 Hb_001080_080 0.0688958455 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
3 Hb_007416_020 0.0856509771 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
4 Hb_002431_050 0.0870718557 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
5 Hb_002234_070 0.088369302 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
6 Hb_010672_060 0.0894127108 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
7 Hb_000029_200 0.0899037998 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
8 Hb_001314_100 0.091046772 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
9 Hb_003125_150 0.0928350333 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
10 Hb_000099_060 0.0932476545 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
11 Hb_134949_020 0.0947540819 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
12 Hb_011781_030 0.0950987019 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
13 Hb_002830_020 0.0958365515 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_001687_040 0.0964045115 - - actin-depolymerizing factor [Hevea brasiliensis]
15 Hb_000283_110 0.0977573655 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
16 Hb_003226_210 0.0978548251 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
17 Hb_001633_030 0.0983566355 - - -
18 Hb_001045_080 0.0985652769 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
19 Hb_012368_020 0.098719365 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
20 Hb_165132_010 0.0987734547 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]

Gene co-expression network

sample Hb_144598_020 Hb_144598_020 Hb_001080_080 Hb_001080_080 Hb_144598_020--Hb_001080_080 Hb_007416_020 Hb_007416_020 Hb_144598_020--Hb_007416_020 Hb_002431_050 Hb_002431_050 Hb_144598_020--Hb_002431_050 Hb_002234_070 Hb_002234_070 Hb_144598_020--Hb_002234_070 Hb_010672_060 Hb_010672_060 Hb_144598_020--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_144598_020--Hb_000029_200 Hb_000221_150 Hb_000221_150 Hb_001080_080--Hb_000221_150 Hb_001080_080--Hb_007416_020 Hb_000028_400 Hb_000028_400 Hb_001080_080--Hb_000028_400 Hb_001045_080 Hb_001045_080 Hb_001080_080--Hb_001045_080 Hb_029584_060 Hb_029584_060 Hb_001080_080--Hb_029584_060 Hb_007416_020--Hb_002431_050 Hb_007416_020--Hb_010672_060 Hb_000365_080 Hb_000365_080 Hb_007416_020--Hb_000365_080 Hb_003226_210 Hb_003226_210 Hb_007416_020--Hb_003226_210 Hb_007416_020--Hb_029584_060 Hb_002431_050--Hb_010672_060 Hb_002830_020 Hb_002830_020 Hb_002431_050--Hb_002830_020 Hb_003893_050 Hb_003893_050 Hb_002431_050--Hb_003893_050 Hb_000283_110 Hb_000283_110 Hb_002431_050--Hb_000283_110 Hb_002431_050--Hb_029584_060 Hb_000684_270 Hb_000684_270 Hb_002234_070--Hb_000684_270 Hb_077354_010 Hb_077354_010 Hb_002234_070--Hb_077354_010 Hb_134949_020 Hb_134949_020 Hb_002234_070--Hb_134949_020 Hb_003125_150 Hb_003125_150 Hb_002234_070--Hb_003125_150 Hb_000987_070 Hb_000987_070 Hb_002234_070--Hb_000987_070 Hb_005063_050 Hb_005063_050 Hb_010672_060--Hb_005063_050 Hb_000699_160 Hb_000699_160 Hb_010672_060--Hb_000699_160 Hb_010672_060--Hb_003893_050 Hb_000111_340 Hb_000111_340 Hb_010672_060--Hb_000111_340 Hb_002864_050 Hb_002864_050 Hb_000029_200--Hb_002864_050 Hb_000510_110 Hb_000510_110 Hb_000029_200--Hb_000510_110 Hb_000029_200--Hb_003893_050 Hb_001314_100 Hb_001314_100 Hb_000029_200--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_000029_200--Hb_012573_070 Hb_007416_030 Hb_007416_030 Hb_000029_200--Hb_007416_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.7952 24.1489 32.7269 34.4174 23.4777 52.1497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.1708 144.698 73.5502 16.741 19.2605

CAGE analysis