Hb_144649_010

Information

Type -
Description -
Location Contig144649: 1254-1616
Sequence    

Annotation

kegg
ID rcu:RCOM_0836350
description 60S ribosomal protein L34, putative
nr
ID ADR71241.1
description 60S ribosomal protein L34A [Hevea brasiliensis]
swissprot
ID P40590
description 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1
trembl
ID I3NMK4
description 60S ribosomal protein L34A OS=Hevea brasiliensis GN=RPL34A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144649_010 0.0 - - 60S ribosomal protein L34A [Hevea brasiliensis]
2 Hb_002362_010 0.0959831108 - - hypothetical protein JCGZ_12328 [Jatropha curcas]
3 Hb_005649_070 0.1190088146 - - conserved hypothetical protein [Ricinus communis]
4 Hb_108744_010 0.1194219455 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_000756_030 0.1208337663 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
6 Hb_004241_140 0.1209350695 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
7 Hb_152528_010 0.1210561574 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
8 Hb_000045_290 0.1289673763 - - -
9 Hb_002486_090 0.1312312699 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
10 Hb_001398_110 0.1329226729 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
11 Hb_006142_020 0.1403710703 - - JHL25P11.12 [Jatropha curcas]
12 Hb_002613_030 0.1407767553 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
13 Hb_000654_060 0.1445495158 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
14 Hb_000331_020 0.1457012312 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000164_030 0.1462766507 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
16 Hb_000896_130 0.1466158237 transcription factor TF Family: CPP cysteine-rich polycomb-like family protein [Populus trichocarpa]
17 Hb_000256_170 0.1545929169 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]
18 Hb_001117_020 0.1586610675 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
19 Hb_048141_060 0.1597886782 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
20 Hb_064971_010 0.161579553 - - hypothetical protein JCGZ_06105 [Jatropha curcas]

Gene co-expression network

sample Hb_144649_010 Hb_144649_010 Hb_002362_010 Hb_002362_010 Hb_144649_010--Hb_002362_010 Hb_005649_070 Hb_005649_070 Hb_144649_010--Hb_005649_070 Hb_108744_010 Hb_108744_010 Hb_144649_010--Hb_108744_010 Hb_000756_030 Hb_000756_030 Hb_144649_010--Hb_000756_030 Hb_004241_140 Hb_004241_140 Hb_144649_010--Hb_004241_140 Hb_152528_010 Hb_152528_010 Hb_144649_010--Hb_152528_010 Hb_002362_010--Hb_000756_030 Hb_000654_060 Hb_000654_060 Hb_002362_010--Hb_000654_060 Hb_002362_010--Hb_152528_010 Hb_002362_010--Hb_108744_010 Hb_022845_010 Hb_022845_010 Hb_002362_010--Hb_022845_010 Hb_005649_070--Hb_004241_140 Hb_000045_290 Hb_000045_290 Hb_005649_070--Hb_000045_290 Hb_001398_110 Hb_001398_110 Hb_005649_070--Hb_001398_110 Hb_000164_030 Hb_000164_030 Hb_005649_070--Hb_000164_030 Hb_055877_010 Hb_055877_010 Hb_005649_070--Hb_055877_010 Hb_048141_060 Hb_048141_060 Hb_005649_070--Hb_048141_060 Hb_108744_010--Hb_000756_030 Hb_108744_010--Hb_152528_010 Hb_006142_020 Hb_006142_020 Hb_108744_010--Hb_006142_020 Hb_108744_010--Hb_000654_060 Hb_169136_010 Hb_169136_010 Hb_108744_010--Hb_169136_010 Hb_108744_010--Hb_005649_070 Hb_000756_030--Hb_152528_010 Hb_000756_030--Hb_000654_060 Hb_000756_030--Hb_006142_020 Hb_000756_030--Hb_004241_140 Hb_000756_030--Hb_001398_110 Hb_004241_140--Hb_000045_290 Hb_004241_140--Hb_001398_110 Hb_001117_020 Hb_001117_020 Hb_004241_140--Hb_001117_020 Hb_004241_140--Hb_055877_010 Hb_019429_020 Hb_019429_020 Hb_004241_140--Hb_019429_020 Hb_152528_010--Hb_000654_060 Hb_152528_010--Hb_001398_110 Hb_152528_010--Hb_022845_010 Hb_152528_010--Hb_004241_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.329978 2.84748 0.927675 0.0960106 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis