Hb_144703_010

Information

Type -
Description -
Location Contig144703: 2075-4149
Sequence    

Annotation

kegg
ID tcc:TCM_000569
description Phospholipase A 2A, IIA,PLA2A
nr
ID XP_007047189.1
description Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
swissprot
ID B8AQW7
description Patatin-like protein 1 OS=Oryza sativa subsp. indica GN=PLP1 PE=3 SV=1
trembl
ID A0A061DHR7
description Patatin OS=Theobroma cacao GN=TCM_000569 PE=3 SV=1
Gene Ontology
ID GO:0016787
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144703_010 0.0 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
2 Hb_000069_540 0.0606091068 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
3 Hb_019496_040 0.0662713117 - - kinase family protein [Populus trichocarpa]
4 Hb_008598_010 0.0787993487 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
5 Hb_000472_020 0.0799386646 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
6 Hb_002902_040 0.0805735901 - - PREDICTED: peroxidase 51 [Jatropha curcas]
7 Hb_000342_020 0.0811753332 - - bel1 homeotic protein, putative [Ricinus communis]
8 Hb_002902_070 0.088249643 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
9 Hb_002151_020 0.0919419216 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
10 Hb_001174_030 0.0940676048 - - unnamed protein product [Vitis vinifera]
11 Hb_000215_290 0.0943025914 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
12 Hb_001706_020 0.0962794468 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
13 Hb_000045_080 0.0997485719 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000613_250 0.1052334846 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
15 Hb_005074_010 0.1055378475 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
16 Hb_001544_070 0.1087569961 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
17 Hb_003835_030 0.1102682595 - - glycosyltransferase, partial [Arabidopsis thaliana]
18 Hb_174101_010 0.111603831 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
19 Hb_000162_070 0.1126043466 - - phospholipase C, putative [Ricinus communis]
20 Hb_000868_130 0.1133683887 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_144703_010 Hb_144703_010 Hb_000069_540 Hb_000069_540 Hb_144703_010--Hb_000069_540 Hb_019496_040 Hb_019496_040 Hb_144703_010--Hb_019496_040 Hb_008598_010 Hb_008598_010 Hb_144703_010--Hb_008598_010 Hb_000472_020 Hb_000472_020 Hb_144703_010--Hb_000472_020 Hb_002902_040 Hb_002902_040 Hb_144703_010--Hb_002902_040 Hb_000342_020 Hb_000342_020 Hb_144703_010--Hb_000342_020 Hb_002902_070 Hb_002902_070 Hb_000069_540--Hb_002902_070 Hb_000069_540--Hb_019496_040 Hb_000868_130 Hb_000868_130 Hb_000069_540--Hb_000868_130 Hb_000069_540--Hb_008598_010 Hb_000069_540--Hb_002902_040 Hb_019496_040--Hb_002902_040 Hb_142026_010 Hb_142026_010 Hb_019496_040--Hb_142026_010 Hb_002151_020 Hb_002151_020 Hb_019496_040--Hb_002151_020 Hb_019496_040--Hb_000342_020 Hb_000045_080 Hb_000045_080 Hb_008598_010--Hb_000045_080 Hb_026144_040 Hb_026144_040 Hb_008598_010--Hb_026144_040 Hb_008598_010--Hb_002151_020 Hb_000162_070 Hb_000162_070 Hb_008598_010--Hb_000162_070 Hb_001544_070 Hb_001544_070 Hb_000472_020--Hb_001544_070 Hb_000613_250 Hb_000613_250 Hb_000472_020--Hb_000613_250 Hb_001174_030 Hb_001174_030 Hb_000472_020--Hb_001174_030 Hb_174101_010 Hb_174101_010 Hb_000472_020--Hb_174101_010 Hb_000472_020--Hb_000342_020 Hb_002902_040--Hb_002151_020 Hb_002902_040--Hb_142026_010 Hb_002205_150 Hb_002205_150 Hb_002902_040--Hb_002205_150 Hb_002902_040--Hb_000342_020 Hb_000342_020--Hb_000613_250 Hb_000342_020--Hb_002151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0567302 23.6876 14.5485 32.688 0.0126723 0.0236138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0863932 0.0226568 0.0426782 11.2761 24.2422

CAGE analysis