Hb_144744_010

Information

Type -
Description -
Location Contig144744: 2615-4444
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID KDP28980.1
description hypothetical protein JCGZ_19531 [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067K9L2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19531 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11674: 2716-3257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144744_010 0.0 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
2 Hb_009028_010 0.069038407 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
3 Hb_000236_410 0.0702363618 - - Paramyosin, putative [Ricinus communis]
4 Hb_001935_140 0.0808544722 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
5 Hb_004371_010 0.083323233 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
6 Hb_000406_110 0.0838317927 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
7 Hb_003060_090 0.0878792387 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
8 Hb_000105_040 0.0887439139 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
9 Hb_032808_030 0.0921870958 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_014834_060 0.0950244597 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
11 Hb_004785_030 0.0964042658 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
12 Hb_007054_040 0.0964596364 - - PREDICTED: protein RST1 [Jatropha curcas]
13 Hb_011242_060 0.097584853 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
14 Hb_000291_090 0.0982037179 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X2 [Jatropha curcas]
15 Hb_001054_030 0.0984459408 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
16 Hb_003581_170 0.0984778439 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
17 Hb_010712_090 0.0987092452 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
18 Hb_007894_130 0.0998804439 - - hypothetical protein RCOM_0584960 [Ricinus communis]
19 Hb_001541_250 0.103577243 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
20 Hb_000321_150 0.1036578388 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_144744_010 Hb_144744_010 Hb_009028_010 Hb_009028_010 Hb_144744_010--Hb_009028_010 Hb_000236_410 Hb_000236_410 Hb_144744_010--Hb_000236_410 Hb_001935_140 Hb_001935_140 Hb_144744_010--Hb_001935_140 Hb_004371_010 Hb_004371_010 Hb_144744_010--Hb_004371_010 Hb_000406_110 Hb_000406_110 Hb_144744_010--Hb_000406_110 Hb_003060_090 Hb_003060_090 Hb_144744_010--Hb_003060_090 Hb_005188_040 Hb_005188_040 Hb_009028_010--Hb_005188_040 Hb_001541_250 Hb_001541_250 Hb_009028_010--Hb_001541_250 Hb_009028_010--Hb_001935_140 Hb_004785_030 Hb_004785_030 Hb_009028_010--Hb_004785_030 Hb_007054_040 Hb_007054_040 Hb_009028_010--Hb_007054_040 Hb_032808_030 Hb_032808_030 Hb_000236_410--Hb_032808_030 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_000236_410--Hb_001935_140 Hb_000105_040 Hb_000105_040 Hb_001935_140--Hb_000105_040 Hb_001935_140--Hb_001541_250 Hb_001935_140--Hb_007054_040 Hb_000862_040 Hb_000862_040 Hb_001935_140--Hb_000862_040 Hb_003581_170 Hb_003581_170 Hb_001935_140--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_001935_140--Hb_005542_140 Hb_000094_320 Hb_000094_320 Hb_004371_010--Hb_000094_320 Hb_000061_490 Hb_000061_490 Hb_004371_010--Hb_000061_490 Hb_000768_180 Hb_000768_180 Hb_004371_010--Hb_000768_180 Hb_000347_120 Hb_000347_120 Hb_004371_010--Hb_000347_120 Hb_000735_160 Hb_000735_160 Hb_004371_010--Hb_000735_160 Hb_002400_140 Hb_002400_140 Hb_000406_110--Hb_002400_140 Hb_004648_050 Hb_004648_050 Hb_000406_110--Hb_004648_050 Hb_000059_020 Hb_000059_020 Hb_000406_110--Hb_000059_020 Hb_000406_110--Hb_032808_030 Hb_006573_210 Hb_006573_210 Hb_000406_110--Hb_006573_210 Hb_014834_060 Hb_014834_060 Hb_003060_090--Hb_014834_060 Hb_000123_350 Hb_000123_350 Hb_003060_090--Hb_000123_350 Hb_011828_030 Hb_011828_030 Hb_003060_090--Hb_011828_030 Hb_004032_040 Hb_004032_040 Hb_003060_090--Hb_004032_040 Hb_000189_100 Hb_000189_100 Hb_003060_090--Hb_000189_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23457 8.88775 1.63742 2.87441 2.93486 3.79887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11802 1.90173 2.07672 3.27109 2.1486

CAGE analysis