Hb_144783_010

Information

Type -
Description -
Location Contig144783: 1735-2365
Sequence    

Annotation

kegg
ID rcu:RCOM_0731890
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002520474.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q9ZW30
description Glutathione S-transferase U1 OS=Arabidopsis thaliana GN=GSTU1 PE=2 SV=1
trembl
ID B9S3A5
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_0731890 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144783_010 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_002475_070 0.0814396136 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
3 Hb_000200_180 0.0929870237 - - -
4 Hb_004316_130 0.0945901872 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
5 Hb_000297_180 0.0947364464 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
6 Hb_002521_010 0.1009211109 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
7 Hb_003893_100 0.1142471978 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
8 Hb_000161_250 0.1210798677 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
9 Hb_035583_010 0.1248807245 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
10 Hb_000513_100 0.1403276539 - - germin-like protein GLP, partial [Manihot esculenta]
11 Hb_028008_010 0.1411146084 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
12 Hb_000076_200 0.1457190866 - - conserved hypothetical protein [Ricinus communis]
13 Hb_175167_020 0.1458085089 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000797_030 0.1476287926 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
15 Hb_000116_550 0.1503941963 - - conserved hypothetical protein [Ricinus communis]
16 Hb_124247_030 0.1520623107 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
17 Hb_006153_190 0.1528138685 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
18 Hb_153457_010 0.1553244079 - - Miraculin precursor, putative [Ricinus communis]
19 Hb_000614_180 0.156492741 - - -
20 Hb_012368_080 0.1570230477 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]

Gene co-expression network

sample Hb_144783_010 Hb_144783_010 Hb_002475_070 Hb_002475_070 Hb_144783_010--Hb_002475_070 Hb_000200_180 Hb_000200_180 Hb_144783_010--Hb_000200_180 Hb_004316_130 Hb_004316_130 Hb_144783_010--Hb_004316_130 Hb_000297_180 Hb_000297_180 Hb_144783_010--Hb_000297_180 Hb_002521_010 Hb_002521_010 Hb_144783_010--Hb_002521_010 Hb_003893_100 Hb_003893_100 Hb_144783_010--Hb_003893_100 Hb_002475_070--Hb_003893_100 Hb_002475_070--Hb_000297_180 Hb_002475_070--Hb_004316_130 Hb_000797_030 Hb_000797_030 Hb_002475_070--Hb_000797_030 Hb_002475_070--Hb_002521_010 Hb_000200_180--Hb_002521_010 Hb_124247_030 Hb_124247_030 Hb_000200_180--Hb_124247_030 Hb_006153_190 Hb_006153_190 Hb_000200_180--Hb_006153_190 Hb_004037_010 Hb_004037_010 Hb_000200_180--Hb_004037_010 Hb_126535_010 Hb_126535_010 Hb_000200_180--Hb_126535_010 Hb_004316_130--Hb_003893_100 Hb_004316_130--Hb_000297_180 Hb_004316_130--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_004316_130--Hb_003097_200 Hb_000297_180--Hb_003893_100 Hb_012368_080 Hb_012368_080 Hb_000297_180--Hb_012368_080 Hb_035583_010 Hb_035583_010 Hb_000297_180--Hb_035583_010 Hb_028008_010 Hb_028008_010 Hb_002521_010--Hb_028008_010 Hb_002521_010--Hb_006153_190 Hb_000021_090 Hb_000021_090 Hb_002521_010--Hb_000021_090 Hb_000513_100 Hb_000513_100 Hb_002521_010--Hb_000513_100 Hb_003893_100--Hb_000797_030 Hb_003893_100--Hb_003097_200 Hb_003893_100--Hb_012368_080 Hb_006637_040 Hb_006637_040 Hb_003893_100--Hb_006637_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.215352 0.62773 6.74455 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 33.4775 1.52961

CAGE analysis