Hb_144787_030

Information

Type -
Description -
Location Contig144787: 17736-18944
Sequence    

Annotation

kegg
ID rcu:RCOM_0294980
description hypothetical protein
nr
ID XP_012074866.1
description PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LS48
description protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana GN=SG1 PE=1 SV=1
trembl
ID A0A067KKP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09016 PE=4 SV=1
Gene Ontology
ID GO:0009543
description chloroplast lumen common family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11675: 15601-18857
cDNA
(Sanger)
(ID:Location)		 023_F02.ab1: 18334-18857

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144787_030 0.0 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
2 Hb_004162_280 0.0536183326 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
3 Hb_001541_260 0.05881462 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
4 Hb_000139_250 0.0641659455 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
5 Hb_000946_120 0.0677832366 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000236_100 0.0689262962 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
7 Hb_000422_140 0.0691365097 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
8 Hb_002499_070 0.0737474842 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
9 Hb_000116_180 0.0755597911 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
10 Hb_000032_490 0.0764555781 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
11 Hb_002942_220 0.0781131477 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
12 Hb_005245_130 0.0784932661 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
13 Hb_000424_010 0.0789148039 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
14 Hb_001541_020 0.0792239794 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
15 Hb_010222_080 0.0799164218 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
16 Hb_175338_020 0.0831101466 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
17 Hb_023001_020 0.0849322304 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
18 Hb_002221_050 0.0852943234 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
19 Hb_075481_030 0.0863657828 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
20 Hb_004656_060 0.0878813644 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]

Gene co-expression network

sample Hb_144787_030 Hb_144787_030 Hb_004162_280 Hb_004162_280 Hb_144787_030--Hb_004162_280 Hb_001541_260 Hb_001541_260 Hb_144787_030--Hb_001541_260 Hb_000139_250 Hb_000139_250 Hb_144787_030--Hb_000139_250 Hb_000946_120 Hb_000946_120 Hb_144787_030--Hb_000946_120 Hb_000236_100 Hb_000236_100 Hb_144787_030--Hb_000236_100 Hb_000422_140 Hb_000422_140 Hb_144787_030--Hb_000422_140 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_004162_280--Hb_000236_100 Hb_000510_310 Hb_000510_310 Hb_004162_280--Hb_000510_310 Hb_004162_280--Hb_000139_250 Hb_001541_260--Hb_000236_100 Hb_001541_260--Hb_000139_250 Hb_000465_470 Hb_000465_470 Hb_001541_260--Hb_000465_470 Hb_000032_490 Hb_000032_490 Hb_001541_260--Hb_000032_490 Hb_001541_260--Hb_000946_120 Hb_002942_220 Hb_002942_220 Hb_000139_250--Hb_002942_220 Hb_023001_020 Hb_023001_020 Hb_000139_250--Hb_023001_020 Hb_000424_010 Hb_000424_010 Hb_000139_250--Hb_000424_010 Hb_012654_010 Hb_012654_010 Hb_000139_250--Hb_012654_010 Hb_000803_300 Hb_000803_300 Hb_000139_250--Hb_000803_300 Hb_012132_030 Hb_012132_030 Hb_000946_120--Hb_012132_030 Hb_000946_120--Hb_000032_490 Hb_000365_140 Hb_000365_140 Hb_000946_120--Hb_000365_140 Hb_000946_120--Hb_000422_140 Hb_005245_130 Hb_005245_130 Hb_000236_100--Hb_005245_130 Hb_002027_260 Hb_002027_260 Hb_000236_100--Hb_002027_260 Hb_010222_080 Hb_010222_080 Hb_000236_100--Hb_010222_080 Hb_005895_040 Hb_005895_040 Hb_000422_140--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000422_140--Hb_004656_060 Hb_000422_140--Hb_000365_140 Hb_002477_130 Hb_002477_130 Hb_000422_140--Hb_002477_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.1997 47.9264 23.7329 13.6093 92.7789 69.7567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.0733 40.0748 33.1983 26.0723 24.8849

CAGE analysis