Hb_144831_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig144831: 2806-3525
Sequence    

Annotation

kegg
ID rcu:RCOM_0571150
description transcription factor, putative
nr
ID XP_002529556.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q08759
description Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1
trembl
ID B9SU87
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0571150 PE=4 SV=1
Gene Ontology
ID GO:0003677
description snrna-activating protein complex subunit 4 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11678: 3087-3395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144831_010 0.0 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
2 Hb_128743_010 0.0630546631 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_004108_100 0.0663276535 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
4 Hb_003785_040 0.0708076767 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
5 Hb_000960_100 0.0743944427 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
6 Hb_001718_090 0.0749850009 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
7 Hb_000032_010 0.0775034015 - - crooked neck protein, putative [Ricinus communis]
8 Hb_004128_050 0.0779615465 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
9 Hb_027760_080 0.0783707257 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000768_070 0.0786280471 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
11 Hb_000661_200 0.0807339724 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
12 Hb_004480_040 0.0808370739 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
13 Hb_000856_140 0.080911282 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
14 Hb_000025_320 0.0818674737 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
15 Hb_009503_030 0.0818926015 - - protein dimerization, putative [Ricinus communis]
16 Hb_006252_020 0.0824697324 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
17 Hb_003470_080 0.0825191727 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
18 Hb_004453_110 0.0827922256 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
19 Hb_004543_030 0.0830865268 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
20 Hb_000671_070 0.0843713075 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]

Gene co-expression network

sample Hb_144831_010 Hb_144831_010 Hb_128743_010 Hb_128743_010 Hb_144831_010--Hb_128743_010 Hb_004108_100 Hb_004108_100 Hb_144831_010--Hb_004108_100 Hb_003785_040 Hb_003785_040 Hb_144831_010--Hb_003785_040 Hb_000960_100 Hb_000960_100 Hb_144831_010--Hb_000960_100 Hb_001718_090 Hb_001718_090 Hb_144831_010--Hb_001718_090 Hb_000032_010 Hb_000032_010 Hb_144831_010--Hb_000032_010 Hb_128743_010--Hb_004108_100 Hb_000025_320 Hb_000025_320 Hb_128743_010--Hb_000025_320 Hb_128743_010--Hb_000960_100 Hb_000661_200 Hb_000661_200 Hb_128743_010--Hb_000661_200 Hb_001959_020 Hb_001959_020 Hb_128743_010--Hb_001959_020 Hb_004108_100--Hb_000960_100 Hb_004108_100--Hb_000025_320 Hb_006816_430 Hb_006816_430 Hb_004108_100--Hb_006816_430 Hb_002022_070 Hb_002022_070 Hb_004108_100--Hb_002022_070 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_000960_100--Hb_002615_090 Hb_000960_100--Hb_002022_070 Hb_000960_100--Hb_000025_320 Hb_002235_300 Hb_002235_300 Hb_000960_100--Hb_002235_300 Hb_001235_230 Hb_001235_230 Hb_000960_100--Hb_001235_230 Hb_000046_010 Hb_000046_010 Hb_001718_090--Hb_000046_010 Hb_000441_070 Hb_000441_070 Hb_001718_090--Hb_000441_070 Hb_000025_360 Hb_000025_360 Hb_001718_090--Hb_000025_360 Hb_006252_020 Hb_006252_020 Hb_001718_090--Hb_006252_020 Hb_001718_090--Hb_003785_040 Hb_000529_260 Hb_000529_260 Hb_001718_090--Hb_000529_260 Hb_019153_020 Hb_019153_020 Hb_000032_010--Hb_019153_020 Hb_003040_020 Hb_003040_020 Hb_000032_010--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000032_010--Hb_004429_160 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000191_130 Hb_000191_130 Hb_000032_010--Hb_000191_130 Hb_000856_140 Hb_000856_140 Hb_000032_010--Hb_000856_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.20341 13.5328 4.99587 4.23979 14.1236 9.24618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57555 5.57523 5.26541 6.76621 8.06444

CAGE analysis