Hb_145022_010

Information

Type -
Description -
Location Contig145022: 720-2459
Sequence    

Annotation

kegg
ID gmx:100800812
description uncharacterized LOC100800812
nr
ID KDP25969.1
description hypothetical protein JCGZ_22699 [Jatropha curcas]
swissprot
ID Q80TM9
description Nischarin OS=Mus musculus GN=Nisch PE=1 SV=2
trembl
ID F6GSN6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02170 PE=4 SV=1
Gene Ontology
ID GO:0005515
description hypothetical protein JCGZ_22699

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11715: 875-2212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145022_010 0.0 - - hypothetical protein JCGZ_22699 [Jatropha curcas]
2 Hb_000599_190 0.0673390753 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
3 Hb_000922_250 0.0785587166 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000471_140 0.0872472036 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g28640 [Prunus mume]
5 Hb_001488_180 0.090643831 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
6 Hb_005186_040 0.0917519784 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
7 Hb_002007_160 0.0934365932 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
8 Hb_005408_030 0.0938244608 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
9 Hb_001628_070 0.0967005131 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_007441_160 0.097158391 - - RNA binding protein, putative [Ricinus communis]
11 Hb_001157_160 0.099972981 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
12 Hb_000024_040 0.1000050435 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
13 Hb_004970_170 0.1007204308 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
14 Hb_004705_020 0.1009314857 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
15 Hb_004934_050 0.1026654 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
16 Hb_062226_070 0.1030540722 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
17 Hb_000009_410 0.1032132906 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
18 Hb_004079_060 0.1033612941 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
19 Hb_000720_150 0.1034099438 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
20 Hb_010712_050 0.1035424025 - - PREDICTED: protein ELC-like [Jatropha curcas]

Gene co-expression network

sample Hb_145022_010 Hb_145022_010 Hb_000599_190 Hb_000599_190 Hb_145022_010--Hb_000599_190 Hb_000922_250 Hb_000922_250 Hb_145022_010--Hb_000922_250 Hb_000471_140 Hb_000471_140 Hb_145022_010--Hb_000471_140 Hb_001488_180 Hb_001488_180 Hb_145022_010--Hb_001488_180 Hb_005186_040 Hb_005186_040 Hb_145022_010--Hb_005186_040 Hb_002007_160 Hb_002007_160 Hb_145022_010--Hb_002007_160 Hb_000599_190--Hb_002007_160 Hb_001104_190 Hb_001104_190 Hb_000599_190--Hb_001104_190 Hb_004705_020 Hb_004705_020 Hb_000599_190--Hb_004705_020 Hb_001217_050 Hb_001217_050 Hb_000599_190--Hb_001217_050 Hb_009767_080 Hb_009767_080 Hb_000599_190--Hb_009767_080 Hb_011883_020 Hb_011883_020 Hb_000922_250--Hb_011883_020 Hb_003528_050 Hb_003528_050 Hb_000922_250--Hb_003528_050 Hb_001691_200 Hb_001691_200 Hb_000922_250--Hb_001691_200 Hb_004934_050 Hb_004934_050 Hb_000922_250--Hb_004934_050 Hb_002631_210 Hb_002631_210 Hb_000922_250--Hb_002631_210 Hb_005408_030 Hb_005408_030 Hb_000471_140--Hb_005408_030 Hb_000206_160 Hb_000206_160 Hb_000471_140--Hb_000206_160 Hb_001998_240 Hb_001998_240 Hb_000471_140--Hb_001998_240 Hb_002539_070 Hb_002539_070 Hb_000471_140--Hb_002539_070 Hb_000471_140--Hb_002631_210 Hb_001473_110 Hb_001473_110 Hb_001488_180--Hb_001473_110 Hb_000028_130 Hb_000028_130 Hb_001488_180--Hb_000028_130 Hb_000479_070 Hb_000479_070 Hb_001488_180--Hb_000479_070 Hb_004204_010 Hb_004204_010 Hb_001488_180--Hb_004204_010 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_000017_220 Hb_000017_220 Hb_001488_180--Hb_000017_220 Hb_012244_020 Hb_012244_020 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_000866_120 Hb_000866_120 Hb_002007_160--Hb_000866_120 Hb_029142_050 Hb_029142_050 Hb_002007_160--Hb_029142_050 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.849282 3.39457 1.37547 1.03619 1.3917 1.66292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.93683 1.5195 2.01748 2.41452 2.24067

CAGE analysis