Hb_145080_010

Information

Type -
Description -
Location Contig145080: 503-3907
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012084338.1
description PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M1DIP4
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039254 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145080_010 0.0 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
2 Hb_112791_030 0.0077949739 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
3 Hb_011358_010 0.0408630532 - - -
4 Hb_011432_010 0.0837573188 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
5 Hb_037519_010 0.0946546525 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
6 Hb_007295_020 0.1126796248 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
7 Hb_002973_130 0.1127261758 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
8 Hb_002876_280 0.1331516171 - - hypothetical protein RCOM_0686540 [Ricinus communis]
9 Hb_125181_010 0.1352953619 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
10 Hb_007590_030 0.1355022925 - - PREDICTED: iridoid synthase [Jatropha curcas]
11 Hb_000193_090 0.1363921775 - - cysteine protease, putative [Ricinus communis]
12 Hb_006351_120 0.1368339777 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
13 Hb_002447_100 0.1405500135 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
14 Hb_016564_050 0.1419945404 - - -
15 Hb_001277_380 0.1420155708 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
16 Hb_000207_240 0.1573051426 - - hypothetical protein RCOM_0686540 [Ricinus communis]
17 Hb_000856_210 0.1601752358 - - nitrate transporter, putative [Ricinus communis]
18 Hb_001355_060 0.1668767096 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_016734_040 0.1689461604 - - abhydrolase domain containing, putative [Ricinus communis]
20 Hb_094437_020 0.1747869447 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_145080_010 Hb_145080_010 Hb_112791_030 Hb_112791_030 Hb_145080_010--Hb_112791_030 Hb_011358_010 Hb_011358_010 Hb_145080_010--Hb_011358_010 Hb_011432_010 Hb_011432_010 Hb_145080_010--Hb_011432_010 Hb_037519_010 Hb_037519_010 Hb_145080_010--Hb_037519_010 Hb_007295_020 Hb_007295_020 Hb_145080_010--Hb_007295_020 Hb_002973_130 Hb_002973_130 Hb_145080_010--Hb_002973_130 Hb_112791_030--Hb_011358_010 Hb_112791_030--Hb_011432_010 Hb_112791_030--Hb_037519_010 Hb_112791_030--Hb_002973_130 Hb_112791_030--Hb_007295_020 Hb_011358_010--Hb_037519_010 Hb_011358_010--Hb_011432_010 Hb_011358_010--Hb_002973_130 Hb_000193_090 Hb_000193_090 Hb_011358_010--Hb_000193_090 Hb_011432_010--Hb_002973_130 Hb_011432_010--Hb_037519_010 Hb_002876_280 Hb_002876_280 Hb_011432_010--Hb_002876_280 Hb_037519_010--Hb_002973_130 Hb_037519_010--Hb_002876_280 Hb_016564_050 Hb_016564_050 Hb_007295_020--Hb_016564_050 Hb_001277_380 Hb_001277_380 Hb_007295_020--Hb_001277_380 Hb_125181_010 Hb_125181_010 Hb_007295_020--Hb_125181_010 Hb_094437_030 Hb_094437_030 Hb_007295_020--Hb_094437_030 Hb_002973_130--Hb_002876_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0220565 0 0.03468 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0159271 0.0810616

CAGE analysis