Hb_145139_010

Information

Type -
Description -
Location Contig145139: 514-3604
Sequence    

Annotation

kegg
ID vvi:104881445
description sugar transporter ERD6-like 5
nr
ID XP_010660051.1
description PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
swissprot
ID Q94KE0
description Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1
trembl
ID V4SFM4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003224mg PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11724: 965-1195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145139_010 0.0 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
2 Hb_002968_010 0.07587028 - - PREDICTED: pectinesterase [Jatropha curcas]
3 Hb_000072_160 0.0793055104 - - proline oxidase [Manihot esculenta]
4 Hb_000656_370 0.0860322448 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_002097_210 0.0900934393 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002272_070 0.098765606 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
7 Hb_002475_010 0.0990874953 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
8 Hb_014361_130 0.1016186946 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
9 Hb_000007_210 0.1065775426 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
10 Hb_002329_030 0.106755059 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
11 Hb_004122_020 0.1102399668 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
12 Hb_000976_340 0.1148260879 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_007237_090 0.1160389753 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000922_290 0.11708832 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
15 Hb_000101_140 0.122597598 - - amino acid transporter, putative [Ricinus communis]
16 Hb_123078_010 0.1232751794 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
17 Hb_006615_190 0.1236915858 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
18 Hb_002239_020 0.1270426548 - - MLO, putative [Theobroma cacao]
19 Hb_011101_010 0.1286694674 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
20 Hb_002236_020 0.1290233249 - - PREDICTED: nephrocystin-3 [Jatropha curcas]

Gene co-expression network

sample Hb_145139_010 Hb_145139_010 Hb_002968_010 Hb_002968_010 Hb_145139_010--Hb_002968_010 Hb_000072_160 Hb_000072_160 Hb_145139_010--Hb_000072_160 Hb_000656_370 Hb_000656_370 Hb_145139_010--Hb_000656_370 Hb_002097_210 Hb_002097_210 Hb_145139_010--Hb_002097_210 Hb_002272_070 Hb_002272_070 Hb_145139_010--Hb_002272_070 Hb_002475_010 Hb_002475_010 Hb_145139_010--Hb_002475_010 Hb_002968_010--Hb_000656_370 Hb_000101_140 Hb_000101_140 Hb_002968_010--Hb_000101_140 Hb_004122_020 Hb_004122_020 Hb_002968_010--Hb_004122_020 Hb_002968_010--Hb_000072_160 Hb_002968_010--Hb_002475_010 Hb_000072_160--Hb_002272_070 Hb_002329_030 Hb_002329_030 Hb_000072_160--Hb_002329_030 Hb_006615_190 Hb_006615_190 Hb_000072_160--Hb_006615_190 Hb_014361_130 Hb_014361_130 Hb_000072_160--Hb_014361_130 Hb_000656_370--Hb_000101_140 Hb_002236_020 Hb_002236_020 Hb_000656_370--Hb_002236_020 Hb_000656_370--Hb_004122_020 Hb_024857_010 Hb_024857_010 Hb_000656_370--Hb_024857_010 Hb_027474_010 Hb_027474_010 Hb_002097_210--Hb_027474_010 Hb_008550_030 Hb_008550_030 Hb_002097_210--Hb_008550_030 Hb_001677_120 Hb_001677_120 Hb_002097_210--Hb_001677_120 Hb_002239_020 Hb_002239_020 Hb_002097_210--Hb_002239_020 Hb_002097_210--Hb_002475_010 Hb_002272_070--Hb_002329_030 Hb_011470_010 Hb_011470_010 Hb_002272_070--Hb_011470_010 Hb_126466_010 Hb_126466_010 Hb_002272_070--Hb_126466_010 Hb_002272_070--Hb_006615_190 Hb_002475_010--Hb_004122_020 Hb_006052_040 Hb_006052_040 Hb_002475_010--Hb_006052_040 Hb_002475_010--Hb_000656_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.78332 0.633581 2.84726 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28999 1.24209

CAGE analysis