Hb_145226_010

Information

Type -
Description -
Location Contig145226: 1581-1991
Sequence    

Annotation

kegg
ID vvi:100262861
description uncharacterized LOC100262861
nr
ID XP_002271911.1
description PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BTC8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11729: 1353-2066
cDNA
(Sanger)
(ID:Location)		 003_G17.ab1: 1411-2062 , 014_L06.ab1: 1425-2062 , 015_J07.ab1: 1430-2062 , 022_D16.ab1: 1392-2067 , 024_F10.ab1: 1461-2062 , 025_G03.ab1: 1411-2063 , 028_C23.ab1: 1438-2068 , 029_C22.ab1: 1428-2048 , 041_A20.ab1: 1399-2066 , 041_H12.ab1: 1411-2063 , 041_K11.ab1: 1438-2066 , 042_H15.ab1: 1432-2066 , 045_D24.ab1: 1353-2062 , 046_C18.ab1: 1414-2063 , 046_G17.ab1: 1392-2066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145226_010 0.0 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
2 Hb_111648_010 0.1262559238 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
3 Hb_099069_010 0.1406574005 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
4 Hb_000041_070 0.1445420031 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
5 Hb_004206_030 0.149581043 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
6 Hb_000078_010 0.1533953122 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
7 Hb_001514_180 0.1561136744 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
8 Hb_000270_410 0.1568218269 - - -
9 Hb_003106_140 0.1649206534 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000444_030 0.1707089505 - - PREDICTED: expansin-A20 [Jatropha curcas]
11 Hb_002685_090 0.1733003092 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
12 Hb_060668_010 0.1744174253 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
13 Hb_001396_220 0.176211322 - - nuclear transport factor, putative [Ricinus communis]
14 Hb_000567_250 0.176887099 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
15 Hb_001012_040 0.1776218459 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
16 Hb_002000_110 0.1802950151 - - ASR-like protein 2 [Hevea brasiliensis]
17 Hb_001741_080 0.1810654779 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
18 Hb_000454_110 0.181755816 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
19 Hb_007810_030 0.1875136816 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
20 Hb_000120_650 0.1930933602 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]

Gene co-expression network

sample Hb_145226_010 Hb_145226_010 Hb_111648_010 Hb_111648_010 Hb_145226_010--Hb_111648_010 Hb_099069_010 Hb_099069_010 Hb_145226_010--Hb_099069_010 Hb_000041_070 Hb_000041_070 Hb_145226_010--Hb_000041_070 Hb_004206_030 Hb_004206_030 Hb_145226_010--Hb_004206_030 Hb_000078_010 Hb_000078_010 Hb_145226_010--Hb_000078_010 Hb_001514_180 Hb_001514_180 Hb_145226_010--Hb_001514_180 Hb_111648_010--Hb_001514_180 Hb_116264_010 Hb_116264_010 Hb_111648_010--Hb_116264_010 Hb_111648_010--Hb_000041_070 Hb_111648_010--Hb_000078_010 Hb_024505_040 Hb_024505_040 Hb_111648_010--Hb_024505_040 Hb_000444_030 Hb_000444_030 Hb_111648_010--Hb_000444_030 Hb_099069_010--Hb_111648_010 Hb_000157_040 Hb_000157_040 Hb_099069_010--Hb_000157_040 Hb_099069_010--Hb_000078_010 Hb_007810_030 Hb_007810_030 Hb_099069_010--Hb_007810_030 Hb_000270_410 Hb_000270_410 Hb_099069_010--Hb_000270_410 Hb_001741_080 Hb_001741_080 Hb_000041_070--Hb_001741_080 Hb_000041_070--Hb_001514_180 Hb_000041_070--Hb_004206_030 Hb_060668_010 Hb_060668_010 Hb_000041_070--Hb_060668_010 Hb_002387_060 Hb_002387_060 Hb_000041_070--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_000041_070--Hb_002685_090 Hb_004206_030--Hb_060668_010 Hb_012725_110 Hb_012725_110 Hb_004206_030--Hb_012725_110 Hb_042729_010 Hb_042729_010 Hb_004206_030--Hb_042729_010 Hb_003106_140 Hb_003106_140 Hb_004206_030--Hb_003106_140 Hb_004206_030--Hb_002387_060 Hb_000078_010--Hb_007810_030 Hb_015934_020 Hb_015934_020 Hb_000078_010--Hb_015934_020 Hb_000367_280 Hb_000367_280 Hb_000078_010--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_000078_010--Hb_001213_120 Hb_004297_040 Hb_004297_040 Hb_000078_010--Hb_004297_040 Hb_001514_180--Hb_024505_040 Hb_001514_180--Hb_001741_080 Hb_001514_180--Hb_060668_010 Hb_001514_180--Hb_000444_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
895.655 40.314 1.11689 3.71572 176.088 1641.97
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2794.15 1521.24 2705.8 184.18 1.31817

CAGE analysis