Hb_145317_010

Information

Type -
Description -
Location Contig145317: 2-668
Sequence    

Annotation

kegg
ID rcu:RCOM_0701700
description Endosomal P24A protein precursor, putative
nr
ID XP_012071431.1
description PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
swissprot
ID Q9FYQ8
description Transmembrane 9 superfamily member 11 OS=Arabidopsis thaliana GN=TMN11 PE=2 SV=1
trembl
ID A0A067KUH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03976 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145317_010 0.0 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
2 Hb_008054_050 0.1353604692 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
3 Hb_009247_010 0.139847853 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
4 Hb_106688_010 0.140578766 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
5 Hb_154538_010 0.1428125789 - - -
6 Hb_004374_130 0.1549146291 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
7 Hb_009393_200 0.1603700558 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
8 Hb_002250_050 0.1651170754 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
9 Hb_177152_010 0.1663011061 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
10 Hb_002675_090 0.1668350794 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009222_070 0.166957778 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
12 Hb_040747_010 0.1675085387 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
13 Hb_000818_100 0.1681918798 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
14 Hb_091675_010 0.1707616713 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
15 Hb_001754_060 0.1779101652 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
16 Hb_001474_040 0.1782014605 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
17 Hb_000179_180 0.1789381333 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
18 Hb_005539_310 0.1794481165 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
19 Hb_083628_010 0.1803049351 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
20 Hb_001493_080 0.180943946 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]

Gene co-expression network

sample Hb_145317_010 Hb_145317_010 Hb_008054_050 Hb_008054_050 Hb_145317_010--Hb_008054_050 Hb_009247_010 Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_008054_050--Hb_004374_130 Hb_161994_040 Hb_161994_040 Hb_008054_050--Hb_161994_040 Hb_000311_030 Hb_000311_030 Hb_008054_050--Hb_000311_030 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_001217_040 Hb_001217_040 Hb_008054_050--Hb_001217_040 Hb_000098_050 Hb_000098_050 Hb_009247_010--Hb_000098_050 Hb_000116_150 Hb_000116_150 Hb_009247_010--Hb_000116_150 Hb_005062_110 Hb_005062_110 Hb_009247_010--Hb_005062_110 Hb_000890_030 Hb_000890_030 Hb_009247_010--Hb_000890_030 Hb_000818_100 Hb_000818_100 Hb_009247_010--Hb_000818_100 Hb_009222_070 Hb_009222_070 Hb_009247_010--Hb_009222_070 Hb_165402_010 Hb_165402_010 Hb_106688_010--Hb_165402_010 Hb_007441_090 Hb_007441_090 Hb_106688_010--Hb_007441_090 Hb_077573_010 Hb_077573_010 Hb_106688_010--Hb_077573_010 Hb_040747_010 Hb_040747_010 Hb_106688_010--Hb_040747_010 Hb_106688_010--Hb_009247_010 Hb_017159_010 Hb_017159_010 Hb_154538_010--Hb_017159_010 Hb_001178_040 Hb_001178_040 Hb_154538_010--Hb_001178_040 Hb_000342_140 Hb_000342_140 Hb_154538_010--Hb_000342_140 Hb_001754_060 Hb_001754_060 Hb_154538_010--Hb_001754_060 Hb_154538_010--Hb_040747_010 Hb_009189_020 Hb_009189_020 Hb_004374_130--Hb_009189_020 Hb_004374_130--Hb_009393_200 Hb_004374_130--Hb_009222_070 Hb_083628_010 Hb_083628_010 Hb_004374_130--Hb_083628_010 Hb_000122_010 Hb_000122_010 Hb_009393_200--Hb_000122_010 Hb_009393_200--Hb_009222_070 Hb_010053_040 Hb_010053_040 Hb_009393_200--Hb_010053_040 Hb_008511_060 Hb_008511_060 Hb_009393_200--Hb_008511_060 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.404 55.7094 37.6553 102.331 29.9118 43.002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40801 4.00695 5.58774 15.5671 8.48074

CAGE analysis