Hb_145603_010

Information

Type -
Description -
Location Contig145603: 3-554
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q05091
description Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance family protein lrr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11827: 415-576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145603_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_090361_010 0.0928542672 - - amino acid transporter, putative [Ricinus communis]
3 Hb_000256_220 0.1472089769 - - PREDICTED: flotillin-like protein 4 [Jatropha curcas]
4 Hb_009222_080 0.1643803242 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
5 Hb_000245_100 0.1651037952 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
6 Hb_006185_040 0.1683862797 - - PREDICTED: verprolin [Jatropha curcas]
7 Hb_000270_750 0.1698781375 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
8 Hb_006916_140 0.1703207065 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
9 Hb_005725_160 0.1721035595 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
10 Hb_027892_050 0.1724837752 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
11 Hb_000956_100 0.174588374 - - Cucumisin precursor, putative [Ricinus communis]
12 Hb_001950_100 0.174652423 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
13 Hb_001221_470 0.1750782481 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
14 Hb_002097_080 0.1759470446 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
15 Hb_001131_050 0.1771985571 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
16 Hb_025668_030 0.1780075702 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
17 Hb_030949_010 0.1807575139 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
18 Hb_002685_220 0.1822033605 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
19 Hb_005329_030 0.1828083854 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
20 Hb_008948_010 0.184592616 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_145603_010 Hb_145603_010 Hb_090361_010 Hb_090361_010 Hb_145603_010--Hb_090361_010 Hb_000256_220 Hb_000256_220 Hb_145603_010--Hb_000256_220 Hb_009222_080 Hb_009222_080 Hb_145603_010--Hb_009222_080 Hb_000245_100 Hb_000245_100 Hb_145603_010--Hb_000245_100 Hb_006185_040 Hb_006185_040 Hb_145603_010--Hb_006185_040 Hb_000270_750 Hb_000270_750 Hb_145603_010--Hb_000270_750 Hb_143871_010 Hb_143871_010 Hb_090361_010--Hb_143871_010 Hb_090361_010--Hb_006185_040 Hb_090361_010--Hb_009222_080 Hb_002685_220 Hb_002685_220 Hb_090361_010--Hb_002685_220 Hb_005725_160 Hb_005725_160 Hb_090361_010--Hb_005725_160 Hb_002066_010 Hb_002066_010 Hb_000256_220--Hb_002066_010 Hb_000256_220--Hb_000270_750 Hb_002973_030 Hb_002973_030 Hb_000256_220--Hb_002973_030 Hb_001318_230 Hb_001318_230 Hb_000256_220--Hb_001318_230 Hb_007103_020 Hb_007103_020 Hb_000256_220--Hb_007103_020 Hb_009222_080--Hb_002685_220 Hb_006916_140 Hb_006916_140 Hb_009222_080--Hb_006916_140 Hb_009222_080--Hb_005725_160 Hb_010968_030 Hb_010968_030 Hb_009222_080--Hb_010968_030 Hb_005329_030 Hb_005329_030 Hb_009222_080--Hb_005329_030 Hb_009222_080--Hb_000245_100 Hb_000245_100--Hb_005329_030 Hb_037684_010 Hb_037684_010 Hb_000245_100--Hb_037684_010 Hb_003858_060 Hb_003858_060 Hb_000245_100--Hb_003858_060 Hb_006355_070 Hb_006355_070 Hb_000245_100--Hb_006355_070 Hb_004204_220 Hb_004204_220 Hb_000245_100--Hb_004204_220 Hb_001013_050 Hb_001013_050 Hb_006185_040--Hb_001013_050 Hb_005408_100 Hb_005408_100 Hb_006185_040--Hb_005408_100 Hb_002510_100 Hb_002510_100 Hb_006185_040--Hb_002510_100 Hb_006185_040--Hb_000270_750 Hb_000181_230 Hb_000181_230 Hb_006185_040--Hb_000181_230 Hb_000363_250 Hb_000363_250 Hb_006185_040--Hb_000363_250 Hb_173107_020 Hb_173107_020 Hb_000270_750--Hb_173107_020 Hb_009771_040 Hb_009771_040 Hb_000270_750--Hb_009771_040 Hb_114733_010 Hb_114733_010 Hb_000270_750--Hb_114733_010 Hb_002250_140 Hb_002250_140 Hb_000270_750--Hb_002250_140 Hb_002168_070 Hb_002168_070 Hb_000270_750--Hb_002168_070 Hb_001269_530 Hb_001269_530 Hb_000270_750--Hb_001269_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.403298 0.0752256 0.728858 0.0495446 0.0439668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.148542 0.515371

CAGE analysis