Hb_145620_010

Information

Type -
Description -
Location Contig145620: 3583-4363
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN71536.1
description hypothetical protein VITISV_019786 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5APM4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019786 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145620_010 0.0 - - hypothetical protein VITISV_019786 [Vitis vinifera]
2 Hb_095937_010 0.0422387721 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_006237_030 0.0824303991 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000659_090 0.0918445384 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
5 Hb_000421_280 0.1008035176 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_000811_090 0.1347472026 - - hypothetical protein VITISV_043745 [Vitis vinifera]
7 Hb_025161_030 0.1999957985 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_009826_010 0.2207315138 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001452_150 0.2210988404 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
10 Hb_003427_040 0.2213781879 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_024248_010 0.2224128544 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
12 Hb_000029_220 0.2233616221 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
13 Hb_004274_010 0.2234731215 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
14 Hb_001496_050 0.2308214508 - - yth domain-containing protein, putative [Ricinus communis]
15 Hb_007975_020 0.2330714787 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_000968_070 0.234283617 - - -
17 Hb_001401_030 0.2356301391 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
18 Hb_005676_020 0.2358029534 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
19 Hb_011649_040 0.2423094772 - - hypothetical protein CISIN_1g039733mg [Citrus sinensis]
20 Hb_027969_010 0.2431059699 - - hypothetical protein JCGZ_24556 [Jatropha curcas]

Gene co-expression network

sample Hb_145620_010 Hb_145620_010 Hb_095937_010 Hb_095937_010 Hb_145620_010--Hb_095937_010 Hb_006237_030 Hb_006237_030 Hb_145620_010--Hb_006237_030 Hb_000659_090 Hb_000659_090 Hb_145620_010--Hb_000659_090 Hb_000421_280 Hb_000421_280 Hb_145620_010--Hb_000421_280 Hb_000811_090 Hb_000811_090 Hb_145620_010--Hb_000811_090 Hb_025161_030 Hb_025161_030 Hb_145620_010--Hb_025161_030 Hb_095937_010--Hb_006237_030 Hb_095937_010--Hb_000659_090 Hb_095937_010--Hb_000421_280 Hb_095937_010--Hb_000811_090 Hb_095937_010--Hb_025161_030 Hb_006237_030--Hb_000659_090 Hb_006237_030--Hb_000421_280 Hb_006237_030--Hb_000811_090 Hb_007975_020 Hb_007975_020 Hb_006237_030--Hb_007975_020 Hb_000659_090--Hb_000421_280 Hb_000659_090--Hb_007975_020 Hb_000659_090--Hb_000811_090 Hb_000421_280--Hb_000811_090 Hb_003915_030 Hb_003915_030 Hb_000421_280--Hb_003915_030 Hb_000907_050 Hb_000907_050 Hb_000811_090--Hb_000907_050 Hb_010964_030 Hb_010964_030 Hb_000811_090--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_000811_090--Hb_030987_010 Hb_094484_010 Hb_094484_010 Hb_025161_030--Hb_094484_010 Hb_010721_040 Hb_010721_040 Hb_025161_030--Hb_010721_040 Hb_128750_010 Hb_128750_010 Hb_025161_030--Hb_128750_010 Hb_102761_010 Hb_102761_010 Hb_025161_030--Hb_102761_010 Hb_004530_010 Hb_004530_010 Hb_025161_030--Hb_004530_010 Hb_000415_080 Hb_000415_080 Hb_025161_030--Hb_000415_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0871654 0 0.0589345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0612993 0.437535

CAGE analysis