Hb_145745_020

Information

Type -
Description -
Location Contig145745: 34272-34645
Sequence    

Annotation

kegg
ID mtr:MTR_069s1001
description Cell wall-associated hydrolase
nr
ID XP_003637074.1
description Cell wall-associated hydrolase, partial [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7ZYC4
description Cell wall-associated hydrolase (Fragment) OS=Medicago truncatula GN=MTR_069s1001 PE=4 SV=1
Gene Ontology
ID GO:0016787
description cell wall-associated partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145745_020 0.0 - - Cell wall-associated hydrolase, partial [Medicago truncatula]
2 Hb_011649_040 0.0641471496 - - hypothetical protein CISIN_1g039733mg [Citrus sinensis]
3 Hb_141708_010 0.1312862152 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
4 Hb_000275_100 0.1566950243 - - BnaC09g26910D [Brassica napus]
5 Hb_012049_010 0.1661598172 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
6 Hb_000015_220 0.1714361868 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
7 Hb_001674_050 0.1718681728 - - cytochrome b6 (chloroplast) [Apios americana]
8 Hb_145745_010 0.1721041541 - - BnaUnng00830D [Brassica napus]
9 Hb_115031_010 0.1749419524 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
10 Hb_015234_010 0.1813445721 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
11 Hb_000635_130 0.1876838981 - - hypothetical protein JCGZ_17952 [Jatropha curcas]
12 Hb_001146_030 0.1893862299 - - cytochrome P450, putative [Ricinus communis]
13 Hb_001085_200 0.1920982137 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
14 Hb_010171_010 0.1969742453 - - hypothetical protein VITISV_033646 [Vitis vinifera]
15 Hb_007645_070 0.1978956416 - - photosystem II cytochrome b559 alpha subunit [Cuscuta obtusiflora]
16 Hb_000844_060 0.2006249693 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
17 Hb_001338_080 0.2039396991 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
18 Hb_002600_110 0.2046003762 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
19 Hb_183479_030 0.2065779362 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
20 Hb_000940_120 0.2072184678 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_145745_020 Hb_145745_020 Hb_011649_040 Hb_011649_040 Hb_145745_020--Hb_011649_040 Hb_141708_010 Hb_141708_010 Hb_145745_020--Hb_141708_010 Hb_000275_100 Hb_000275_100 Hb_145745_020--Hb_000275_100 Hb_012049_010 Hb_012049_010 Hb_145745_020--Hb_012049_010 Hb_000015_220 Hb_000015_220 Hb_145745_020--Hb_000015_220 Hb_001674_050 Hb_001674_050 Hb_145745_020--Hb_001674_050 Hb_011649_040--Hb_000275_100 Hb_010171_010 Hb_010171_010 Hb_011649_040--Hb_010171_010 Hb_011649_040--Hb_141708_010 Hb_011649_040--Hb_000015_220 Hb_011649_040--Hb_012049_010 Hb_141708_010--Hb_001674_050 Hb_001338_080 Hb_001338_080 Hb_141708_010--Hb_001338_080 Hb_182972_020 Hb_182972_020 Hb_141708_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_141708_010--Hb_000627_200 Hb_063885_010 Hb_063885_010 Hb_141708_010--Hb_063885_010 Hb_145745_010 Hb_145745_010 Hb_141708_010--Hb_145745_010 Hb_007595_020 Hb_007595_020 Hb_000275_100--Hb_007595_020 Hb_000275_100--Hb_010171_010 Hb_000367_220 Hb_000367_220 Hb_000275_100--Hb_000367_220 Hb_007595_050 Hb_007595_050 Hb_000275_100--Hb_007595_050 Hb_012049_010--Hb_000015_220 Hb_004197_030 Hb_004197_030 Hb_012049_010--Hb_004197_030 Hb_000043_060 Hb_000043_060 Hb_012049_010--Hb_000043_060 Hb_094074_010 Hb_094074_010 Hb_012049_010--Hb_094074_010 Hb_004329_030 Hb_004329_030 Hb_012049_010--Hb_004329_030 Hb_000940_120 Hb_000940_120 Hb_012049_010--Hb_000940_120 Hb_000015_220--Hb_000043_060 Hb_000015_220--Hb_004197_030 Hb_000015_220--Hb_094074_010 Hb_002294_020 Hb_002294_020 Hb_000015_220--Hb_002294_020 Hb_002960_180 Hb_002960_180 Hb_000015_220--Hb_002960_180 Hb_001674_050--Hb_001338_080 Hb_001674_050--Hb_063885_010 Hb_001674_050--Hb_182972_020 Hb_001083_040 Hb_001083_040 Hb_001674_050--Hb_001083_040 Hb_151890_020 Hb_151890_020 Hb_001674_050--Hb_151890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.1001 3.4636 82.4966 313.919 1.05761 178.415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.327962 0.456121 5.04035 1840.83

CAGE analysis