Hb_145880_010

Information

Type -
Description -
Location Contig145880: 12758-18013
Sequence    

Annotation

kegg
ID pop:POPTR_0015s11450g
description POPTRDRAFT_252901; hypothetical protein
nr
ID XP_012090624.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067JIA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26394 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145880_010 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
2 Hb_009083_070 0.0715763025 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
3 Hb_001318_020 0.0835022441 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
4 Hb_184798_080 0.0872772198 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
5 Hb_006922_010 0.0875040811 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
6 Hb_008160_030 0.0875198587 - - DNA binding protein, putative [Ricinus communis]
7 Hb_001205_200 0.0890206881 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000940_200 0.0907797254 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
9 Hb_005000_260 0.0915421568 - - recA family protein [Populus trichocarpa]
10 Hb_006588_200 0.0921842065 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
11 Hb_000089_120 0.0929589441 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_002046_110 0.0937539111 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
13 Hb_000070_080 0.0938252418 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
14 Hb_003464_080 0.0940601188 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
15 Hb_001135_120 0.0961035056 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
16 Hb_002056_090 0.096202965 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
17 Hb_000928_220 0.0968242443 - - PREDICTED: protein SCAI [Jatropha curcas]
18 Hb_006355_090 0.0972773456 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
19 Hb_008103_060 0.0975903155 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
20 Hb_001840_090 0.0978917633 - - Phytosulfokine receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_145880_010 Hb_145880_010 Hb_009083_070 Hb_009083_070 Hb_145880_010--Hb_009083_070 Hb_001318_020 Hb_001318_020 Hb_145880_010--Hb_001318_020 Hb_184798_080 Hb_184798_080 Hb_145880_010--Hb_184798_080 Hb_006922_010 Hb_006922_010 Hb_145880_010--Hb_006922_010 Hb_008160_030 Hb_008160_030 Hb_145880_010--Hb_008160_030 Hb_001205_200 Hb_001205_200 Hb_145880_010--Hb_001205_200 Hb_002276_240 Hb_002276_240 Hb_009083_070--Hb_002276_240 Hb_009083_070--Hb_184798_080 Hb_004129_070 Hb_004129_070 Hb_009083_070--Hb_004129_070 Hb_001135_120 Hb_001135_120 Hb_009083_070--Hb_001135_120 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_009615_170 Hb_009615_170 Hb_001318_020--Hb_009615_170 Hb_006355_090 Hb_006355_090 Hb_001318_020--Hb_006355_090 Hb_140049_080 Hb_140049_080 Hb_001318_020--Hb_140049_080 Hb_001377_160 Hb_001377_160 Hb_001318_020--Hb_001377_160 Hb_000130_020 Hb_000130_020 Hb_001318_020--Hb_000130_020 Hb_061878_010 Hb_061878_010 Hb_001318_020--Hb_061878_010 Hb_001147_110 Hb_001147_110 Hb_184798_080--Hb_001147_110 Hb_002325_040 Hb_002325_040 Hb_184798_080--Hb_002325_040 Hb_184798_080--Hb_004129_070 Hb_184798_080--Hb_002276_240 Hb_184798_080--Hb_001135_120 Hb_033772_030 Hb_033772_030 Hb_006922_010--Hb_033772_030 Hb_005000_260 Hb_005000_260 Hb_006922_010--Hb_005000_260 Hb_002900_090 Hb_002900_090 Hb_006922_010--Hb_002900_090 Hb_003370_030 Hb_003370_030 Hb_006922_010--Hb_003370_030 Hb_007163_120 Hb_007163_120 Hb_006922_010--Hb_007163_120 Hb_000739_100 Hb_000739_100 Hb_006922_010--Hb_000739_100 Hb_000352_260 Hb_000352_260 Hb_008160_030--Hb_000352_260 Hb_000940_200 Hb_000940_200 Hb_008160_030--Hb_000940_200 Hb_008160_030--Hb_009083_070 Hb_000363_400 Hb_000363_400 Hb_008160_030--Hb_000363_400 Hb_008160_030--Hb_184798_080 Hb_000087_060 Hb_000087_060 Hb_001205_200--Hb_000087_060 Hb_004143_100 Hb_004143_100 Hb_001205_200--Hb_004143_100 Hb_000076_160 Hb_000076_160 Hb_001205_200--Hb_000076_160 Hb_000402_230 Hb_000402_230 Hb_001205_200--Hb_000402_230 Hb_000358_230 Hb_000358_230 Hb_001205_200--Hb_000358_230 Hb_003866_080 Hb_003866_080 Hb_001205_200--Hb_003866_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46433 4.66871 3.05327 4.33748 3.45 3.28583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86945 2.54064 2.85648 4.52486 1.20869

CAGE analysis