Hb_145880_030

Information

Type -
Description -
Location Contig145880: 27962-32257
Sequence    

Annotation

kegg
ID rcu:RCOM_1504700
description ubiquitin-conjugating enzyme E2-25kD, putative (EC:6.3.2.19)
nr
ID XP_002511117.1
description ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
swissprot
ID Q9FI61
description Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1
trembl
ID B9RA92
description Ubiquitin-conjugating enzyme E2-25kD, putative OS=Ricinus communis GN=RCOM_1504700 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11846: 28010-32192 , PASA_asmbl_11847: 28632-28755
cDNA
(Sanger)
(ID:Location)		 008_L09.ab1: 28201-32192

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145880_030 0.0 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
2 Hb_010407_040 0.0584669874 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
3 Hb_007778_030 0.0664445013 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
4 Hb_000141_040 0.0684623999 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
5 Hb_001662_070 0.0693451821 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
6 Hb_165132_010 0.0693820596 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
7 Hb_023226_040 0.0699185706 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
8 Hb_033594_110 0.0731675315 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
9 Hb_000251_070 0.0737910687 - - hypothetical protein L484_010641 [Morus notabilis]
10 Hb_011381_060 0.0742571474 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
11 Hb_003363_110 0.0753880381 - - protein with unknown function [Ricinus communis]
12 Hb_000805_120 0.0796109454 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
13 Hb_002007_060 0.0796712632 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
14 Hb_001269_680 0.080610758 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
15 Hb_000000_160 0.0810721416 - - PREDICTED: membrin-11 [Jatropha curcas]
16 Hb_000494_020 0.082096711 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
17 Hb_028995_040 0.0852390874 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
18 Hb_002045_040 0.0856581029 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_001817_090 0.087188466 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
20 Hb_004453_170 0.0878526648 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]

Gene co-expression network

sample Hb_145880_030 Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_145880_030--Hb_010407_040 Hb_007778_030 Hb_007778_030 Hb_145880_030--Hb_007778_030 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_001662_070 Hb_001662_070 Hb_145880_030--Hb_001662_070 Hb_165132_010 Hb_165132_010 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040 Hb_000494_020 Hb_000494_020 Hb_010407_040--Hb_000494_020 Hb_000163_160 Hb_000163_160 Hb_010407_040--Hb_000163_160 Hb_003363_110 Hb_003363_110 Hb_010407_040--Hb_003363_110 Hb_010407_040--Hb_007778_030 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_001269_680 Hb_001269_680 Hb_007778_030--Hb_001269_680 Hb_007778_030--Hb_165132_010 Hb_007778_030--Hb_000163_160 Hb_000160_130 Hb_000160_130 Hb_007778_030--Hb_000160_130 Hb_002007_060 Hb_002007_060 Hb_000141_040--Hb_002007_060 Hb_000395_290 Hb_000395_290 Hb_000141_040--Hb_000395_290 Hb_000141_040--Hb_003363_110 Hb_000866_270 Hb_000866_270 Hb_000141_040--Hb_000866_270 Hb_003078_040 Hb_003078_040 Hb_000141_040--Hb_003078_040 Hb_025645_010 Hb_025645_010 Hb_001662_070--Hb_025645_010 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_023226_040--Hb_002007_060 Hb_023226_040--Hb_000866_270 Hb_000023_230 Hb_000023_230 Hb_023226_040--Hb_000023_230 Hb_004657_050 Hb_004657_050 Hb_023226_040--Hb_004657_050 Hb_023226_040--Hb_000000_160 Hb_028995_040 Hb_028995_040 Hb_023226_040--Hb_028995_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.025 39.507 61.0814 46.5944 72.8728 66.8767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.399 123.721 62.909 23.5777 18.7428

CAGE analysis