Hb_146255_020

Information

Type -
Description -
Location Contig146255: 12590-15531
Sequence    

Annotation

kegg
ID rcu:RCOM_1004090
description snf5, putative
nr
ID XP_012084228.1
description PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
swissprot
ID P93045
description Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2
trembl
ID A0A067JYY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19103 PE=4 SV=1
Gene Ontology
ID GO:0000228
description chromatin structure-remodeling complex protein bsh

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11887: 12604-15534
cDNA
(Sanger)
(ID:Location)		 013_F22.ab1: 14113-15490

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146255_020 0.0 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
2 Hb_006061_040 0.0674092387 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
3 Hb_004807_020 0.0736122102 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
4 Hb_002343_040 0.0790357113 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001025_090 0.0877016929 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
6 Hb_001105_170 0.0886690294 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
7 Hb_001804_090 0.0927210296 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
8 Hb_000176_020 0.0928017172 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
9 Hb_000300_260 0.0938519532 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
10 Hb_001863_380 0.095241194 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
11 Hb_010098_020 0.0963941606 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_000537_100 0.0965427288 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_029622_120 0.0967491731 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
14 Hb_006615_050 0.0982617527 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
15 Hb_000926_200 0.0995344334 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
16 Hb_001178_010 0.0995713963 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
17 Hb_001517_050 0.0996548222 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
18 Hb_012340_090 0.1006689614 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
19 Hb_014497_100 0.1021632027 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
20 Hb_000789_320 0.1033682333 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_146255_020 Hb_146255_020 Hb_006061_040 Hb_006061_040 Hb_146255_020--Hb_006061_040 Hb_004807_020 Hb_004807_020 Hb_146255_020--Hb_004807_020 Hb_002343_040 Hb_002343_040 Hb_146255_020--Hb_002343_040 Hb_001025_090 Hb_001025_090 Hb_146255_020--Hb_001025_090 Hb_001105_170 Hb_001105_170 Hb_146255_020--Hb_001105_170 Hb_001804_090 Hb_001804_090 Hb_146255_020--Hb_001804_090 Hb_006061_040--Hb_004807_020 Hb_006061_040--Hb_001804_090 Hb_000926_200 Hb_000926_200 Hb_006061_040--Hb_000926_200 Hb_011053_010 Hb_011053_010 Hb_006061_040--Hb_011053_010 Hb_006061_040--Hb_002343_040 Hb_004807_020--Hb_001025_090 Hb_006615_050 Hb_006615_050 Hb_004807_020--Hb_006615_050 Hb_001025_120 Hb_001025_120 Hb_004807_020--Hb_001025_120 Hb_171900_090 Hb_171900_090 Hb_004807_020--Hb_171900_090 Hb_018790_020 Hb_018790_020 Hb_004807_020--Hb_018790_020 Hb_001863_380 Hb_001863_380 Hb_002343_040--Hb_001863_380 Hb_012340_090 Hb_012340_090 Hb_002343_040--Hb_012340_090 Hb_002343_040--Hb_001105_170 Hb_002343_040--Hb_004807_020 Hb_002343_040--Hb_001025_090 Hb_000270_470 Hb_000270_470 Hb_001025_090--Hb_000270_470 Hb_001025_090--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_001025_090--Hb_000176_020 Hb_000789_320 Hb_000789_320 Hb_001025_090--Hb_000789_320 Hb_000875_080 Hb_000875_080 Hb_001025_090--Hb_000875_080 Hb_003848_040 Hb_003848_040 Hb_001105_170--Hb_003848_040 Hb_001105_170--Hb_012340_090 Hb_001105_170--Hb_001863_380 Hb_012565_070 Hb_012565_070 Hb_001105_170--Hb_012565_070 Hb_000300_260 Hb_000300_260 Hb_001105_170--Hb_000300_260 Hb_000330_090 Hb_000330_090 Hb_001804_090--Hb_000330_090 Hb_007199_020 Hb_007199_020 Hb_001804_090--Hb_007199_020 Hb_001804_090--Hb_001105_170 Hb_001178_010 Hb_001178_010 Hb_001804_090--Hb_001178_010 Hb_002759_190 Hb_002759_190 Hb_001804_090--Hb_002759_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7695 16.1797 44.7086 17.2087 9.63739 11.8669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4722 25.8948 11.3055 13.0369 15.3975

CAGE analysis