Hb_146255_030

Information

Type transcription factor
Description TF Family: bZIP
Location Contig146255: 15796-17687
Sequence    

Annotation

kegg
ID rcu:RCOM_1004100
description Transcription factor HY5, putative
nr
ID XP_012084230.1
description PREDICTED: transcription factor HY5-like [Jatropha curcas]
swissprot
ID Q8W191
description Transcription factor HY5-like OS=Arabidopsis thaliana GN=HYH PE=1 SV=1
trembl
ID A0A067K6Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19105 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor hy5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11888: 15791-16372 , PASA_asmbl_11889: 15791-17223 , PASA_asmbl_11890: 15656-16361 , PASA_asmbl_11892: 17251-17697
cDNA
(Sanger)
(ID:Location)		 021_J24.ab1: 15791-16370

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146255_030 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
2 Hb_004032_400 0.0306841806 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
3 Hb_002752_020 0.0390873617 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
4 Hb_000497_050 0.0495854861 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
5 Hb_002534_020 0.0500537508 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
6 Hb_001307_050 0.0532076078 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
7 Hb_001277_350 0.0554800865 - - early light-induced protein, putative [Ricinus communis]
8 Hb_004837_010 0.0576243152 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
9 Hb_000418_130 0.0596883676 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
10 Hb_004338_050 0.0604745648 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
11 Hb_000179_010 0.0668926797 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
12 Hb_008225_050 0.070260242 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
13 Hb_002121_050 0.0719497483 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
14 Hb_001006_040 0.0723466889 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
15 Hb_001488_230 0.0735343582 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
16 Hb_009588_010 0.0737315693 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
17 Hb_002028_020 0.0739997499 - - acyltransferase, putative [Ricinus communis]
18 Hb_001975_100 0.0766158672 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
19 Hb_002328_080 0.0782337648 - - short-chain dehydrogenase, putative [Ricinus communis]
20 Hb_011724_040 0.0786176648 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]

Gene co-expression network

sample Hb_146255_030 Hb_146255_030 Hb_004032_400 Hb_004032_400 Hb_146255_030--Hb_004032_400 Hb_002752_020 Hb_002752_020 Hb_146255_030--Hb_002752_020 Hb_000497_050 Hb_000497_050 Hb_146255_030--Hb_000497_050 Hb_002534_020 Hb_002534_020 Hb_146255_030--Hb_002534_020 Hb_001307_050 Hb_001307_050 Hb_146255_030--Hb_001307_050 Hb_001277_350 Hb_001277_350 Hb_146255_030--Hb_001277_350 Hb_000418_130 Hb_000418_130 Hb_004032_400--Hb_000418_130 Hb_004032_400--Hb_002752_020 Hb_004837_010 Hb_004837_010 Hb_004032_400--Hb_004837_010 Hb_009588_010 Hb_009588_010 Hb_004032_400--Hb_009588_010 Hb_002028_020 Hb_002028_020 Hb_004032_400--Hb_002028_020 Hb_002752_020--Hb_000497_050 Hb_008225_050 Hb_008225_050 Hb_002752_020--Hb_008225_050 Hb_002752_020--Hb_001277_350 Hb_004338_050 Hb_004338_050 Hb_002752_020--Hb_004338_050 Hb_000497_050--Hb_001277_350 Hb_000497_050--Hb_004338_050 Hb_000497_050--Hb_001307_050 Hb_002121_050 Hb_002121_050 Hb_000497_050--Hb_002121_050 Hb_002534_020--Hb_001277_350 Hb_002534_020--Hb_000497_050 Hb_002534_020--Hb_002752_020 Hb_011724_040 Hb_011724_040 Hb_002534_020--Hb_011724_040 Hb_002534_020--Hb_004032_400 Hb_000179_010 Hb_000179_010 Hb_001307_050--Hb_000179_010 Hb_029991_010 Hb_029991_010 Hb_001307_050--Hb_029991_010 Hb_001307_050--Hb_004837_010 Hb_001307_050--Hb_004338_050 Hb_001958_060 Hb_001958_060 Hb_001277_350--Hb_001958_060 Hb_001975_100 Hb_001975_100 Hb_001277_350--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.469745 9.2636 5.9045 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 15.6997

CAGE analysis