Hb_146464_010

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig146464: 329-1663
Sequence    

Annotation

kegg
ID rcu:RCOM_0968980
description Nuclear transcription factor Y subunit A-1, putative
nr
ID XP_012065570.1
description PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q945M9
description Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1
trembl
ID A0A067LH09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16766 PE=4 SV=1
Gene Ontology
ID GO:0003700
description nuclear transcription factor y subunit a-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146464_010 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
2 Hb_005551_060 0.1092009876 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
3 Hb_001348_150 0.1134632019 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
4 Hb_001247_120 0.1153550874 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
5 Hb_006582_020 0.1267516461 - - Zinc finger protein ZFPM1 [Theobroma cacao]
6 Hb_004032_270 0.1304049727 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
7 Hb_001610_110 0.1348999834 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
8 Hb_002745_010 0.1351495262 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
9 Hb_001220_030 0.1368328633 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
10 Hb_001318_030 0.1369734082 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
11 Hb_001564_080 0.140570769 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
12 Hb_003106_040 0.1425271913 - - lipase, putative [Ricinus communis]
13 Hb_005843_100 0.1441256223 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
14 Hb_001053_030 0.1459056535 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
15 Hb_000084_030 0.1488353362 - - conserved hypothetical protein [Ricinus communis]
16 Hb_027506_020 0.1489454034 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
17 Hb_000140_070 0.1499105631 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
18 Hb_005396_050 0.149985615 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
19 Hb_004324_340 0.1501098396 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000665_010 0.1508142516 - - hypothetical protein 20 [Hevea brasiliensis]

Gene co-expression network

sample Hb_146464_010 Hb_146464_010 Hb_005551_060 Hb_005551_060 Hb_146464_010--Hb_005551_060 Hb_001348_150 Hb_001348_150 Hb_146464_010--Hb_001348_150 Hb_001247_120 Hb_001247_120 Hb_146464_010--Hb_001247_120 Hb_006582_020 Hb_006582_020 Hb_146464_010--Hb_006582_020 Hb_004032_270 Hb_004032_270 Hb_146464_010--Hb_004032_270 Hb_001610_110 Hb_001610_110 Hb_146464_010--Hb_001610_110 Hb_005551_060--Hb_001247_120 Hb_027506_020 Hb_027506_020 Hb_005551_060--Hb_027506_020 Hb_001220_030 Hb_001220_030 Hb_005551_060--Hb_001220_030 Hb_000140_070 Hb_000140_070 Hb_005551_060--Hb_000140_070 Hb_002745_010 Hb_002745_010 Hb_005551_060--Hb_002745_010 Hb_001348_150--Hb_001247_120 Hb_001348_150--Hb_002745_010 Hb_076693_020 Hb_076693_020 Hb_001348_150--Hb_076693_020 Hb_001053_030 Hb_001053_030 Hb_001348_150--Hb_001053_030 Hb_001348_150--Hb_000140_070 Hb_011512_080 Hb_011512_080 Hb_001348_150--Hb_011512_080 Hb_001860_020 Hb_001860_020 Hb_001247_120--Hb_001860_020 Hb_001864_060 Hb_001864_060 Hb_001247_120--Hb_001864_060 Hb_000025_330 Hb_000025_330 Hb_001247_120--Hb_000025_330 Hb_000672_030 Hb_000672_030 Hb_001247_120--Hb_000672_030 Hb_002435_110 Hb_002435_110 Hb_006582_020--Hb_002435_110 Hb_006582_020--Hb_004032_270 Hb_005843_100 Hb_005843_100 Hb_006582_020--Hb_005843_100 Hb_000016_100 Hb_000016_100 Hb_006582_020--Hb_000016_100 Hb_001318_030 Hb_001318_030 Hb_006582_020--Hb_001318_030 Hb_000237_080 Hb_000237_080 Hb_006582_020--Hb_000237_080 Hb_009838_050 Hb_009838_050 Hb_004032_270--Hb_009838_050 Hb_004032_270--Hb_001318_030 Hb_004032_270--Hb_001610_110 Hb_004032_270--Hb_076693_020 Hb_000567_210 Hb_000567_210 Hb_004032_270--Hb_000567_210 Hb_012807_050 Hb_012807_050 Hb_004032_270--Hb_012807_050 Hb_001623_140 Hb_001623_140 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001288_080 Hb_001288_080 Hb_001610_110--Hb_001288_080 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.30818 21.7644 2.93407 3.47169 6.97539 9.30169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.77068 10.3337 6.74136 2.73865 0.695911

CAGE analysis