Hb_146617_010

Information

Type -
Description -
Location Contig146617: 10-3327
Sequence    

Annotation

kegg
ID pda:103699620
description uncharacterized LOC103699620
nr
ID XP_012481130.1
description PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146617_010 0.0 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
2 Hb_148800_010 0.2518826778 - - -
3 Hb_001711_040 0.2705050036 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004687_010 0.2910613672 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_170193_020 0.2953871099 - - -
6 Hb_011872_010 0.2977547912 - - -
7 Hb_000856_120 0.3000557064 transcription factor TF Family: LOB PREDICTED: myb-like protein M [Pyrus x bretschneideri]
8 Hb_006103_040 0.302812591 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_008783_010 0.3109996957 - - -
10 Hb_002918_020 0.313732339 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
11 Hb_012539_030 0.3173041882 - - PREDICTED: uncharacterized protein LOC105638247 [Jatropha curcas]
12 Hb_000832_010 0.3177353502 - - hypothetical protein VITISV_005044 [Vitis vinifera]
13 Hb_011537_070 0.3239115381 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
14 Hb_002849_160 0.3306638586 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
15 Hb_156850_130 0.3326733893 - - conserved hypothetical protein [Ricinus communis]
16 Hb_099496_010 0.333685585 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
17 Hb_003417_070 0.3342896587 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
18 Hb_000812_030 0.3348906054 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_000505_120 0.3367920491 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_000703_180 0.3370423513 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_146617_010 Hb_146617_010 Hb_148800_010 Hb_148800_010 Hb_146617_010--Hb_148800_010 Hb_001711_040 Hb_001711_040 Hb_146617_010--Hb_001711_040 Hb_004687_010 Hb_004687_010 Hb_146617_010--Hb_004687_010 Hb_170193_020 Hb_170193_020 Hb_146617_010--Hb_170193_020 Hb_011872_010 Hb_011872_010 Hb_146617_010--Hb_011872_010 Hb_000856_120 Hb_000856_120 Hb_146617_010--Hb_000856_120 Hb_148800_010--Hb_011872_010 Hb_012539_030 Hb_012539_030 Hb_148800_010--Hb_012539_030 Hb_000703_180 Hb_000703_180 Hb_148800_010--Hb_000703_180 Hb_004208_010 Hb_004208_010 Hb_148800_010--Hb_004208_010 Hb_007317_090 Hb_007317_090 Hb_148800_010--Hb_007317_090 Hb_038862_010 Hb_038862_010 Hb_148800_010--Hb_038862_010 Hb_001711_040--Hb_000856_120 Hb_005765_020 Hb_005765_020 Hb_001711_040--Hb_005765_020 Hb_001863_410 Hb_001863_410 Hb_001711_040--Hb_001863_410 Hb_000028_270 Hb_000028_270 Hb_001711_040--Hb_000028_270 Hb_000832_010 Hb_000832_010 Hb_001711_040--Hb_000832_010 Hb_058095_030 Hb_058095_030 Hb_001711_040--Hb_058095_030 Hb_000574_140 Hb_000574_140 Hb_004687_010--Hb_000574_140 Hb_004241_030 Hb_004241_030 Hb_004687_010--Hb_004241_030 Hb_001241_050 Hb_001241_050 Hb_004687_010--Hb_001241_050 Hb_006103_040 Hb_006103_040 Hb_004687_010--Hb_006103_040 Hb_008783_010 Hb_008783_010 Hb_004687_010--Hb_008783_010 Hb_105581_010 Hb_105581_010 Hb_004687_010--Hb_105581_010 Hb_044005_010 Hb_044005_010 Hb_170193_020--Hb_044005_010 Hb_099496_010 Hb_099496_010 Hb_170193_020--Hb_099496_010 Hb_001516_050 Hb_001516_050 Hb_170193_020--Hb_001516_050 Hb_002780_060 Hb_002780_060 Hb_170193_020--Hb_002780_060 Hb_000559_070 Hb_000559_070 Hb_170193_020--Hb_000559_070 Hb_022213_030 Hb_022213_030 Hb_170193_020--Hb_022213_030 Hb_011872_010--Hb_012539_030 Hb_001050_030 Hb_001050_030 Hb_011872_010--Hb_001050_030 Hb_011872_010--Hb_007317_090 Hb_011139_050 Hb_011139_050 Hb_011872_010--Hb_011139_050 Hb_011872_010--Hb_038862_010 Hb_000856_120--Hb_001863_410 Hb_005999_010 Hb_005999_010 Hb_000856_120--Hb_005999_010 Hb_003442_120 Hb_003442_120 Hb_000856_120--Hb_003442_120 Hb_009780_010 Hb_009780_010 Hb_000856_120--Hb_009780_010 Hb_118046_010 Hb_118046_010 Hb_000856_120--Hb_118046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0766376 0.0897593 0.0191818 0 0 0.029452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0744022 0.0934868

CAGE analysis