Hb_146673_010

Information

Type -
Description -
Location Contig146673: 1005-4221
Sequence    

Annotation

kegg
ID tcc:TCM_004218
description Aldolase-type TIM barrel family protein
nr
ID XP_012092126.1
description PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
swissprot
ID O22765
description Tryptophan synthase alpha chain OS=Arabidopsis thaliana GN=TRPA1 PE=1 SV=2
trembl
ID A0A067JC03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21847 PE=3 SV=1
Gene Ontology
ID GO:0004834
description tryptophan synthase alpha chain-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146673_010 0.0 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
2 Hb_000633_020 0.0656604826 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
3 Hb_002477_300 0.0656833962 - - transcription factor, putative [Ricinus communis]
4 Hb_000465_090 0.0708788829 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
5 Hb_002946_190 0.0785988595 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
6 Hb_003077_020 0.078684928 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000731_160 0.0799581087 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
8 Hb_003942_020 0.0844027456 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
9 Hb_002876_240 0.085456078 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
10 Hb_002820_050 0.08739026 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
11 Hb_003848_040 0.0905512118 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
12 Hb_004096_090 0.0913040144 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
13 Hb_000094_330 0.0915471003 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
14 Hb_000529_030 0.091651359 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000012_250 0.0917682534 - - hypothetical protein L484_019524 [Morus notabilis]
16 Hb_004410_080 0.0924504821 - - cellular nucleic acid binding protein, putative [Ricinus communis]
17 Hb_001195_480 0.0937424155 - - cop9 complex subunit, putative [Ricinus communis]
18 Hb_011512_070 0.0951861508 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
19 Hb_001472_100 0.0963867829 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
20 Hb_012565_070 0.0966658589 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]

Gene co-expression network

sample Hb_146673_010 Hb_146673_010 Hb_000633_020 Hb_000633_020 Hb_146673_010--Hb_000633_020 Hb_002477_300 Hb_002477_300 Hb_146673_010--Hb_002477_300 Hb_000465_090 Hb_000465_090 Hb_146673_010--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_000731_160 Hb_000731_160 Hb_146673_010--Hb_000731_160 Hb_004410_080 Hb_004410_080 Hb_000633_020--Hb_004410_080 Hb_004096_090 Hb_004096_090 Hb_000633_020--Hb_004096_090 Hb_011512_070 Hb_011512_070 Hb_000633_020--Hb_011512_070 Hb_004157_020 Hb_004157_020 Hb_000633_020--Hb_004157_020 Hb_000236_390 Hb_000236_390 Hb_000633_020--Hb_000236_390 Hb_004449_170 Hb_004449_170 Hb_002477_300--Hb_004449_170 Hb_002477_300--Hb_000465_090 Hb_002477_300--Hb_000731_160 Hb_001329_290 Hb_001329_290 Hb_002477_300--Hb_001329_290 Hb_001012_010 Hb_001012_010 Hb_002477_300--Hb_001012_010 Hb_000465_090--Hb_001012_010 Hb_009694_010 Hb_009694_010 Hb_000465_090--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_000465_090--Hb_005697_060 Hb_007163_070 Hb_007163_070 Hb_000465_090--Hb_007163_070 Hb_004041_020 Hb_004041_020 Hb_002946_190--Hb_004041_020 Hb_000690_190 Hb_000690_190 Hb_002946_190--Hb_000690_190 Hb_001863_380 Hb_001863_380 Hb_002946_190--Hb_001863_380 Hb_000413_240 Hb_000413_240 Hb_002946_190--Hb_000413_240 Hb_001472_100 Hb_001472_100 Hb_002946_190--Hb_001472_100 Hb_018133_020 Hb_018133_020 Hb_003077_020--Hb_018133_020 Hb_003077_020--Hb_004157_020 Hb_012114_070 Hb_012114_070 Hb_003077_020--Hb_012114_070 Hb_000599_260 Hb_000599_260 Hb_003077_020--Hb_000599_260 Hb_003728_060 Hb_003728_060 Hb_003077_020--Hb_003728_060 Hb_000012_250 Hb_000012_250 Hb_000731_160--Hb_000012_250 Hb_000731_160--Hb_001472_100 Hb_006570_140 Hb_006570_140 Hb_000731_160--Hb_006570_140 Hb_000185_050 Hb_000185_050 Hb_000731_160--Hb_000185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5389 14.3867 50.2888 19.3734 23.3124 28.5697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.8583 51.8222 20.812 17.1704 27.1503

CAGE analysis