Hb_146930_010

Information

Type -
Description -
Location Contig146930: 1-2937
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11907: 1-675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146930_010 0.0 - - -
2 Hb_000751_050 0.0539905375 - - PREDICTED: extensin, partial [Solanum lycopersicum]
3 Hb_000751_070 0.0940737974 - - -
4 Hb_001597_090 0.0946592502 - - -
5 Hb_000751_060 0.11233507 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
6 Hb_000645_250 0.1223532728 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
7 Hb_007676_060 0.1299517365 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
8 Hb_078081_020 0.1322901173 - - -
9 Hb_001597_110 0.1407163358 - - -
10 Hb_001949_010 0.1415411205 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
11 Hb_178703_010 0.1432215292 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_001288_050 0.1457494196 - - -
13 Hb_006573_250 0.1471611637 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
14 Hb_000567_150 0.1483093276 - - cysteine protease, putative [Ricinus communis]
15 Hb_005550_040 0.1542760093 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
16 Hb_011576_010 0.1558639498 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_060152_010 0.1569853728 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
18 Hb_004310_170 0.1582716689 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
19 Hb_032223_020 0.1582876751 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000009_430 0.1591775485 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_146930_010 Hb_146930_010 Hb_000751_050 Hb_000751_050 Hb_146930_010--Hb_000751_050 Hb_000751_070 Hb_000751_070 Hb_146930_010--Hb_000751_070 Hb_001597_090 Hb_001597_090 Hb_146930_010--Hb_001597_090 Hb_000751_060 Hb_000751_060 Hb_146930_010--Hb_000751_060 Hb_000645_250 Hb_000645_250 Hb_146930_010--Hb_000645_250 Hb_007676_060 Hb_007676_060 Hb_146930_010--Hb_007676_060 Hb_000751_050--Hb_001597_090 Hb_005550_040 Hb_005550_040 Hb_000751_050--Hb_005550_040 Hb_078081_020 Hb_078081_020 Hb_000751_050--Hb_078081_020 Hb_001949_010 Hb_001949_010 Hb_000751_050--Hb_001949_010 Hb_178703_010 Hb_178703_010 Hb_000751_050--Hb_178703_010 Hb_000567_150 Hb_000567_150 Hb_000751_070--Hb_000567_150 Hb_060152_010 Hb_060152_010 Hb_000751_070--Hb_060152_010 Hb_000751_070--Hb_000645_250 Hb_000751_070--Hb_000751_060 Hb_001288_050 Hb_001288_050 Hb_000751_070--Hb_001288_050 Hb_001597_090--Hb_007676_060 Hb_001597_090--Hb_001288_050 Hb_001597_090--Hb_000751_070 Hb_001571_020 Hb_001571_020 Hb_001597_090--Hb_001571_020 Hb_000751_060--Hb_000645_250 Hb_000751_060--Hb_060152_010 Hb_168319_060 Hb_168319_060 Hb_000751_060--Hb_168319_060 Hb_000847_120 Hb_000847_120 Hb_000751_060--Hb_000847_120 Hb_000645_250--Hb_000847_120 Hb_008376_020 Hb_008376_020 Hb_000645_250--Hb_008376_020 Hb_000645_250--Hb_060152_010 Hb_000609_020 Hb_000609_020 Hb_000645_250--Hb_000609_020 Hb_170878_060 Hb_170878_060 Hb_007676_060--Hb_170878_060 Hb_000675_040 Hb_000675_040 Hb_007676_060--Hb_000675_040 Hb_000169_100 Hb_000169_100 Hb_007676_060--Hb_000169_100 Hb_007676_060--Hb_001288_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0581258 4.25072 18.3104 42.2229 0.038429 0.0792932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0174384 0.0661662 157.15 97.8561

CAGE analysis